RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 YPEL3P61236 119 aaPredicted RBP10.89□□□□□ -0.67
RTN3-210ENST00000540798 TMEM183AQ8IXX5 376 aa10.89□□□□□ -0.67
RTN3-210ENST00000540798 TBX15Q96SF7 602 aa10.89□□□□□ -0.67
RTN3-210ENST00000540798 A0A0U1RQK1 487 aa10.89□□□□□ -0.67
RTN3-210ENST00000540798 ZNF320A2RRD8 509 aa10.89□□□□□ -0.67
RTN3-210ENST00000540798 ISLRO14498 428 aa10.89□□□□□ -0.67
RTN3-210ENST00000540798 GOSR1O95249 250 aa10.89□□□□□ -0.67
RTN3-210ENST00000540798 IGKV1-17P01599 117 aa10.89□□□□□ -0.67
RTN3-210ENST00000540798 PSG1P11464 419 aa10.89□□□□□ -0.67
RTN3-210ENST00000540798 JOSD1Q15040 202 aaPredicted RBP10.89□□□□□ -0.67
RTN3-210ENST00000540798 MRPL27Q9P0M9 148 aaKnown RBP10.89□□□□□ -0.67
RTN3-210ENST00000540798 POLR3KQ9Y2Y1 108 aaPredicted RBP10.89□□□□□ -0.67
RTN3-210ENST00000540798 A0A1W2PRD5 423 aa10.88□□□□□ -0.67
RTN3-210ENST00000540798 A0A1W2PRF3 423 aa10.88□□□□□ -0.67
RTN3-210ENST00000540798 A0A1W2PRM7 423 aa10.88□□□□□ -0.67
RTN3-210ENST00000540798 SLC17A3O00476 420 aa10.88□□□□□ -0.67
RTN3-210ENST00000540798 PEX7O00628 323 aa10.88□□□□□ -0.67
RTN3-210ENST00000540798 UBE2E1P51965 193 aa10.88□□□□□ -0.67
RTN3-210ENST00000540798 TIGITQ495A1 244 aa10.88□□□□□ -0.67
RTN3-210ENST00000540798 ZNF48Q96MX3 618 aaPredicted RBP10.88□□□□□ -0.67
RTN3-210ENST00000540798 GAGE1Q13065 139 aa10.88□□□□□ -0.67
RTN3-210ENST00000540798 TTC9CQ8N5M4 171 aa10.88□□□□□ -0.67
RTN3-210ENST00000540798 BPESC1Q9GZL8 116 aa10.88□□□□□ -0.67
RTN3-210ENST00000540798 TMEM14CQ9P0S9 112 aa10.88□□□□□ -0.67
RTN3-210ENST00000540798 SPTBN1Q01082 2364 aaKnown RBP10.87□□□□□ -0.67
RTN3-210ENST00000540798 IGLV11-55A0A075B6I3 123 aa10.87□□□□□ -0.67
RTN3-210ENST00000540798 ERVFC1-1P60608 527 aa10.87□□□□□ -0.67
RTN3-210ENST00000540798 LOC102724200A0A096LPH7 203 aaPredicted RBP10.87□□□□□ -0.67
RTN3-210ENST00000540798 TOX4O94842 621 aa10.87□□□□□ -0.67
RTN3-210ENST00000540798 AMBPP02760 352 aa10.87□□□□□ -0.67
RTN3-210ENST00000540798 CX3CL1P78423 397 aa10.87□□□□□ -0.67
RTN3-210ENST00000540798 NDPQ00604 133 aa10.87□□□□□ -0.67
RTN3-210ENST00000540798 HES1Q14469 280 aa10.87□□□□□ -0.67
RTN3-210ENST00000540798 Q6ZVH6 145 aa10.87□□□□□ -0.67
RTN3-210ENST00000540798 FANCD2OSQ96PS1 177 aa10.87□□□□□ -0.67
RTN3-210ENST00000540798 HIGD1AQ9Y241 93 aa10.87□□□□□ -0.67
RTN3-210ENST00000540798 KLF12Q9Y4X4 402 aa10.87□□□□□ -0.67
RTN3-210ENST00000540798 RPEL1Q2QD12 228 aa10.87□□□□□ -0.67
RTN3-210ENST00000540798 ARPC1AQ92747 370 aa10.87□□□□□ -0.67
RTN3-210ENST00000540798 RASL11BQ9BPW5 248 aa10.87□□□□□ -0.67
RTN3-210ENST00000540798 FAM103A1Q9BTL3 118 aaKnown RBP10.87□□□□□ -0.67
RTN3-210ENST00000540798 IGHV4-39P01824 125 aa10.86□□□□□ -0.67
RTN3-210ENST00000540798 NBEAP1P0C6P0 100 aa10.86□□□□□ -0.67
RTN3-210ENST00000540798 CNN1P51911 297 aaKnown RBP10.86□□□□□ -0.67
RTN3-210ENST00000540798 LINC00479Q96M42 142 aa10.86□□□□□ -0.67
RTN3-210ENST00000540798 FAM208BQ5VWN6 2430 aa10.86□□□□□ -0.67
RTN3-210ENST00000540798 TMEM183BQ1AE95 376 aa10.86□□□□□ -0.67
RTN3-210ENST00000540798 FAM231DQ6ZW35 169 aa10.86□□□□□ -0.67
RTN3-210ENST00000540798 SLC25A39Q9BZJ4 359 aaPredicted RBP10.86□□□□□ -0.67
RTN3-210ENST00000540798 EPDR1Q9UM22 224 aa10.86□□□□□ -0.67
RTN3-210ENST00000540798 RNF24Q9Y225 148 aa10.86□□□□□ -0.67
RTN3-210ENST00000540798 TRAPPC1Q9Y5R8 145 aa10.86□□□□□ -0.67
RTN3-210ENST00000540798 XKRY2A2RUG3 117 aa10.85□□□□□ -0.67
RTN3-210ENST00000540798 TOMM40O96008 361 aa10.85□□□□□ -0.67
RTN3-210ENST00000540798 EGR2P11161 476 aaPredicted RBP10.85□□□□□ -0.67
RTN3-210ENST00000540798 KLK9Q2XQG4 91 aa10.85□□□□□ -0.67
RTN3-210ENST00000540798 SMIM12Q96EX1 92 aa10.85□□□□□ -0.67
RTN3-210ENST00000540798 RNASE7Q9H1E1 156 aaKnown RBP10.85□□□□□ -0.67
RTN3-210ENST00000540798 C7orf69Q9H7B7 122 aa10.85□□□□□ -0.67
RTN3-210ENST00000540798 KLK9Q9UKQ9 250 aa10.85□□□□□ -0.67
RTN3-210ENST00000540798 M0QZ24 198 aa10.85□□□□□ -0.67
RTN3-210ENST00000540798 CFAP46Q8IYW2 2715 aa10.85□□□□□ -0.67
RTN3-210ENST00000540798 WI2-2373I1.2A0A1W2PRP0 233 aa10.84□□□□□ -0.67
RTN3-210ENST00000540798 SMIM27A0A1W2PRY6 76 aa10.84□□□□□ -0.67
RTN3-210ENST00000540798 F8W735 103 aaPredicted RBP10.84□□□□□ -0.67
RTN3-210ENST00000540798 Q8N9W7 124 aa10.84□□□□□ -0.67
RTN3-210ENST00000540798 TMEM190Q8WZ59 177 aa10.84□□□□□ -0.67
RTN3-210ENST00000540798 LYZP61626 148 aa10.84□□□□□ -0.67
RTN3-210ENST00000540798 RANP62826 216 aaKnown RBP10.84□□□□□ -0.67
RTN3-210ENST00000540798 DNLZQ5SXM8 178 aa10.84□□□□□ -0.67
RTN3-210ENST00000540798 IGHV7-81A0A0B4J1V7 117 aa10.84□□□□□ -0.67
RTN3-210ENST00000540798 H3BRN7 92 aa10.84□□□□□ -0.67
RTN3-210ENST00000540798 IBA57Q5T440 356 aaKnown RBP10.84□□□□□ -0.67
RTN3-210ENST00000540798 LEMD1Q68G75 181 aa10.84□□□□□ -0.67
RTN3-210ENST00000540798 MBD6Q96DN6 1003 aa10.84□□□□□ -0.67
RTN3-210ENST00000540798 SHANK2-AS3Q9BTD1 123 aa10.84□□□□□ -0.67
RTN3-210ENST00000540798 CHTOPQ9Y3Y2 248 aaKnown RBP10.84□□□□□ -0.67
RTN3-210ENST00000540798 TRAV30A0A087WSZ9 112 aa10.83□□□□□ -0.68
RTN3-210ENST00000540798 CCL25O15444 150 aa10.83□□□□□ -0.68
RTN3-210ENST00000540798 HLA-DRB1P01911 266 aa10.83□□□□□ -0.68
RTN3-210ENST00000540798 GNG5P63218 68 aa10.83□□□□□ -0.68
RTN3-210ENST00000540798 KLF17Q5JT82 389 aaPredicted RBP10.83□□□□□ -0.68
RTN3-210ENST00000540798 ZNF491Q8N8L2 437 aa10.83□□□□□ -0.68
RTN3-210ENST00000540798 PGPA6NDG6 321 aa10.83□□□□□ -0.68
RTN3-210ENST00000540798 NCBP2LA6PVI3 153 aaKnown RBP10.83□□□□□ -0.68
RTN3-210ENST00000540798 FAM106CPP0CH98 169 aa10.83□□□□□ -0.68
RTN3-210ENST00000540798 BRS3P32247 399 aa10.83□□□□□ -0.68
RTN3-210ENST00000540798 C5orf17Q8NAS9 161 aa10.83□□□□□ -0.68
RTN3-210ENST00000540798 BLNKQ8WV28 456 aa10.83□□□□□ -0.68
RTN3-210ENST00000540798 TRBV9A0A0B4J1U6 114 aa10.82□□□□□ -0.68
RTN3-210ENST00000540798 HIST1H1EP10412 219 aaKnown RBP10.82□□□□□ -0.68
RTN3-210ENST00000540798 CDKN1BP46527 198 aa10.82□□□□□ -0.68
RTN3-210ENST00000540798 FAM120AOSQ5T036 256 aa10.82□□□□□ -0.68
RTN3-210ENST00000540798 MLST8Q9BVC4 326 aa10.82□□□□□ -0.68
RTN3-210ENST00000540798 Q9H3A6 140 aa10.82□□□□□ -0.68
RTN3-210ENST00000540798 ZNF586Q9NXT0 402 aa10.82□□□□□ -0.68
RTN3-210ENST00000540798 MRPS12O15235 138 aaKnown RBP10.82□□□□□ -0.68
RTN3-210ENST00000540798 SLC25A5P05141 298 aaKnown RBP10.82□□□□□ -0.68
RTN3-210ENST00000540798 CD33P20138 364 aa10.82□□□□□ -0.68
RTN3-210ENST00000540798 ADMP35318 185 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms