RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 SIGLEC15Q6ZMC9 328 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 KIR2DL5AQ8N109 375 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 TMEM252Q8N6L7 170 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 BPIFCQ8NFQ6 507 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 STXBP6Q8NFX7 210 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 KIR2DL5BQ8NHK3 375 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 C17orf77Q96MU5 243 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 EDA2RQ9HAV5 297 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 SEPSECSQ9HD40 501 aaKnown RBP9.57□□□□□ -0.88
VPS28-216ENST00000533806 RETNQ9HD89 108 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 NRN1Q9NPD7 142 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 PFDN2Q9UHV9 154 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 KMT2CQ8NEZ4 4911 aaKnown RBP9.56□□□□□ -0.88
VPS28-216ENST00000533806 SMCO3A2RU48 225 aa9.56□□□□□ -0.88
VPS28-216ENST00000533806 CST7O76096 145 aa9.56□□□□□ -0.88
VPS28-216ENST00000533806 PVALBP20472 110 aaPredicted RBP9.56□□□□□ -0.88
VPS28-216ENST00000533806 SULT1A1P50225 295 aa9.56□□□□□ -0.88
VPS28-216ENST00000533806 CAV2P51636 162 aa9.56□□□□□ -0.88
VPS28-216ENST00000533806 DEFB131AP59861 70 aa9.56□□□□□ -0.88
VPS28-216ENST00000533806 S100A10P60903 97 aa9.56□□□□□ -0.88
VPS28-216ENST00000533806 CYCSP99999 105 aaKnown RBP9.56□□□□□ -0.88
VPS28-216ENST00000533806 SLC38A11Q08AI6 406 aa9.56□□□□□ -0.88
VPS28-216ENST00000533806 MGAT4CQ9UBM8 478 aa9.56□□□□□ -0.88
VPS28-216ENST00000533806 ZNF98A6NK75 572 aa9.55□□□□□ -0.88
VPS28-216ENST00000533806 UBE2CO00762 179 aa9.55□□□□□ -0.88
VPS28-216ENST00000533806 SOCS3O14543 225 aa9.55□□□□□ -0.88
VPS28-216ENST00000533806 ORM2P19652 201 aa9.55□□□□□ -0.88
VPS28-216ENST00000533806 BCAP31P51572 246 aa9.55□□□□□ -0.88
VPS28-216ENST00000533806 PATE2Q6UY27 113 aa9.55□□□□□ -0.88
VPS28-216ENST00000533806 Q6ZWC4 215 aa9.55□□□□□ -0.88
VPS28-216ENST00000533806 CHAC2Q8WUX2 184 aa9.55□□□□□ -0.88
VPS28-216ENST00000533806 MGST2Q99735 147 aa9.55□□□□□ -0.88
VPS28-216ENST00000533806 OVOL2Q9BRP0 275 aa9.55□□□□□ -0.88
VPS28-216ENST00000533806 RNF126Q9BV68 326 aa9.55□□□□□ -0.88
VPS28-216ENST00000533806 OR5AC2Q9NZP5 309 aa9.55□□□□□ -0.88
VPS28-216ENST00000533806 FBXL17Q9UF56 701 aa9.55□□□□□ -0.88
VPS28-216ENST00000533806 WDR83OSQ9Y284 106 aa9.55□□□□□ -0.88
VPS28-216ENST00000533806 CSMD3Q7Z407 3707 aa9.54□□□□□ -0.88
VPS28-216ENST00000533806 AGPAT2O15120 278 aa9.54□□□□□ -0.88
VPS28-216ENST00000533806 ZNF688P0C7X2 276 aa9.54□□□□□ -0.88
VPS28-216ENST00000533806 LINC00869P0C866 280 aa9.54□□□□□ -0.88
VPS28-216ENST00000533806 S100A11P31949 105 aa9.54□□□□□ -0.88
VPS28-216ENST00000533806 APOC4P55056 127 aa9.54□□□□□ -0.88
VPS28-216ENST00000533806 LEMD1Q68G75 181 aa9.54□□□□□ -0.88
VPS28-216ENST00000533806 TMEM217Q8N7C4 229 aa9.54□□□□□ -0.88
VPS28-216ENST00000533806 SHANK2-AS3Q9BTD1 123 aa9.54□□□□□ -0.88
VPS28-216ENST00000533806 TP53TG1Q9Y2A0 90 aa9.54□□□□□ -0.88
VPS28-216ENST00000533806 ALG5Q9Y673 324 aa9.54□□□□□ -0.88
VPS28-216ENST00000533806 E5RGE8 158 aa9.53□□□□□ -0.88
VPS28-216ENST00000533806 H3BRN7 92 aa9.53□□□□□ -0.88
VPS28-216ENST00000533806 SSNA1O43805 119 aa9.53□□□□□ -0.88
VPS28-216ENST00000533806 HYPMO75409 117 aa9.53□□□□□ -0.88
VPS28-216ENST00000533806 RPL35AP18077 110 aaKnown RBP9.53□□□□□ -0.88
VPS28-216ENST00000533806 TRPT1Q86TN4 253 aaKnown RBP9.53□□□□□ -0.88
VPS28-216ENST00000533806 ZNF546Q86UE3 836 aa9.53□□□□□ -0.88
VPS28-216ENST00000533806 OR8I2Q8N0Y5 310 aa9.53□□□□□ -0.88
VPS28-216ENST00000533806 OR1B1Q8NGR6 318 aa9.53□□□□□ -0.88
VPS28-216ENST00000533806 PPP1R1CQ8WVI7 109 aa9.53□□□□□ -0.88
VPS28-216ENST00000533806 TMEM147Q9BVK8 224 aa9.53□□□□□ -0.88
VPS28-216ENST00000533806 SLC25A39Q9BZJ4 359 aaPredicted RBP9.53□□□□□ -0.88
VPS28-216ENST00000533806 CSTL1Q9H114 145 aa9.53□□□□□ -0.88
VPS28-216ENST00000533806 SLC25A32Q9H2D1 315 aa9.53□□□□□ -0.88
VPS28-216ENST00000533806 UQCC1Q9NVA1 299 aa9.53□□□□□ -0.88
VPS28-216ENST00000533806 MPC2O95563 127 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 RLN2P04090 185 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 GIG44P09565 113 aaPredicted RBP9.52□□□□□ -0.89
VPS28-216ENST00000533806 CXCL3P19876 107 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 PRR20EP86478 221 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 PRR20CP86479 221 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 PRR20DP86480 221 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 PRR20BP86481 221 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 PRR20AP86496 221 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 NHLH2Q02577 135 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 ATP6V1FQ16864 119 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 PXDC1Q5TGL8 231 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 STX12Q86Y82 276 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 RNF183Q96D59 192 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 DOK5Q9P104 306 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 HIGD1AQ9Y241 93 aa9.52□□□□□ -0.89
VPS28-216ENST00000533806 KNCNA6PVL3 124 aa9.51□□□□□ -0.89
VPS28-216ENST00000533806 MRPS12O15235 138 aaKnown RBP9.51□□□□□ -0.89
VPS28-216ENST00000533806 LYL1P12980 280 aa9.51□□□□□ -0.89
VPS28-216ENST00000533806 CAMLGP49069 296 aa9.51□□□□□ -0.89
VPS28-216ENST00000533806 SNRPD3P62318 126 aaKnown RBP9.51□□□□□ -0.89
VPS28-216ENST00000533806 HBG1P69891 147 aa9.51□□□□□ -0.89
VPS28-216ENST00000533806 HBG2P69892 147 aa9.51□□□□□ -0.89
VPS28-216ENST00000533806 EWSR1Q01844 656 aaKnown RBP eCLIP9.51□□□□□ -0.89
VPS28-216ENST00000533806 LRRC37A5PQ49AS3 106 aa9.51□□□□□ -0.89
VPS28-216ENST00000533806 PSMG4Q5JS54 123 aa9.51□□□□□ -0.89
VPS28-216ENST00000533806 TMEM37Q8WXS4 190 aa9.51□□□□□ -0.89
VPS28-216ENST00000533806 PPP1R14BQ96C90 147 aa9.51□□□□□ -0.89
VPS28-216ENST00000533806 GPR82Q96P67 336 aa9.51□□□□□ -0.89
VPS28-216ENST00000533806 UHRF2Q96PU4 802 aa9.51□□□□□ -0.89
VPS28-216ENST00000533806 SCRT1Q9BWW7 348 aa9.51□□□□□ -0.89
VPS28-216ENST00000533806 ARL6Q9H0F7 186 aa9.51□□□□□ -0.89
VPS28-216ENST00000533806 ISLRO14498 428 aa9.5□□□□□ -0.89
VPS28-216ENST00000533806 SPRY2O43597 315 aa9.5□□□□□ -0.89
VPS28-216ENST00000533806 S100A7P31151 101 aa9.5□□□□□ -0.89
VPS28-216ENST00000533806 RPL29P47914 159 aaKnown RBP9.5□□□□□ -0.89
VPS28-216ENST00000533806 PSMB3P49720 205 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms