RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 CHD5Q8TDI0 1954 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 A0A0D9SFI3 127 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 A0A1B0GV72 72 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 PQLC2LA1A4F0 135 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 IGSF23A1L1A6 192 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 C5orf49A4QMS7 147 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 SMIM9A6NGZ8 99 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 DISC1C4P0D8 188 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 C8orf87E5RJ46 101 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 H0YJX3 145 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 PSMD12O00232 456 aaPredicted RBP1.29□□□□□ -2.2
CD44-233ENST00000531141 ARL6IP5O75915 188 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 EPPINO95925 133 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 HBZP02008 142 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 CD79AP11912 226 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 GADD45AP24522 165 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 ZNF140P52738 457 aaPredicted RBP1.29□□□□□ -2.2
CD44-233ENST00000531141 AKR1C2P52895 323 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 TCL1AP56279 114 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 SPCS3P61009 180 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 RAB4BP61018 213 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 TFAMQ00059 246 aaKnown RBP1.29□□□□□ -2.2
CD44-233ENST00000531141 SKP2Q13309 424 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 C1DQ13901 141 aaKnown RBP1.29□□□□□ -2.2
CD44-233ENST00000531141 LIN52Q52LA3 116 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 TRMT12Q53H54 448 aaKnown RBP1.29□□□□□ -2.2
CD44-233ENST00000531141 DEFB121Q5J5C9 76 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.29□□□□□ -2.2
CD44-233ENST00000531141 HACD4Q5VWC8 232 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 VN1R4Q7Z5H5 301 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 LYG2Q86SG7 212 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 OR6V1Q8N148 313 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 ZFAND2AQ8N6M9 145 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 OR10X1Q8NGY0 326 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 RNASE11Q8TAA1 199 aaKnown RBP1.29□□□□□ -2.2
CD44-233ENST00000531141 NEK7Q8TDX7 302 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 ZNF418Q8TF45 676 aaPredicted RBP1.29□□□□□ -2.2
CD44-233ENST00000531141 Q8WTZ3 238 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 RNASE6Q93091 150 aaKnown RBP1.29□□□□□ -2.2
CD44-233ENST00000531141 DGCR14Q96DF8 476 aaKnown RBP1.29□□□□□ -2.2
CD44-233ENST00000531141 OR7D2Q96RA2 312 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 PHB2Q99623 299 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 PECRQ9BY49 303 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 KRTAP4-1Q9BYQ7 146 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 OR51I1Q9H343 314 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 TRABDQ9H4I3 376 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 METTL17Q9H7H0 456 aaPredicted RBP1.29□□□□□ -2.2
CD44-233ENST00000531141 NMNAT1Q9HAN9 279 aaPredicted RBP1.29□□□□□ -2.2
CD44-233ENST00000531141 C19orf12Q9NSK7 152 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 WASHC3Q9Y3C0 194 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 HEY1Q9Y5J3 304 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 ALG5Q9Y673 324 aa1.29□□□□□ -2.2
CD44-233ENST00000531141 EML6Q6ZMW3 1958 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 GNG14A0A1W2PPG7 69 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 A8MWP6 167 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 CHP2O43745 196 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 STK16O75716 305 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 ATP5G1P05496 136 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 UQCRHP07919 91 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 FBP1P09467 338 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 OR4A8P0C604 315 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 CPMP14384 443 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 G0S2P27469 103 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 OR1E2P47887 323 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 MARCKSL1P49006 195 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 PSME3P61289 254 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 RPS24P62847 133 aaKnown RBP1.28□□□□□ -2.2
CD44-233ENST00000531141 S100A12P80511 92 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 FABP5Q01469 135 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 TAF1AQ15573 450 aaPredicted RBP1.28□□□□□ -2.2
CD44-233ENST00000531141 MOGQ16653 247 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 CENPWQ5EE01 88 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 HENMT1Q5T8I9 393 aaKnown RBP1.28□□□□□ -2.2
CD44-233ENST00000531141 FAM78BQ5VT40 261 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 TRIQKQ629K1 86 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 OR10K2Q6IF99 312 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 SFXN4Q6P4A7 337 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 NAA40Q86UY6 237 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 TBC1D19Q8N5T2 526 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 OR9I1Q8NGQ6 314 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 OR1L8Q8NGR8 309 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 TNFAIP8L1Q8WVP5 186 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 PSMF1Q92530 271 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 SLC35B4Q969S0 331 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 BORCS7Q96B45 105 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 GALMQ96C23 342 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 DCUN1D1Q96GG9 259 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 ACY3Q96HD9 319 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 CMSS1Q9BQ75 279 aaKnown RBP1.28□□□□□ -2.2
CD44-233ENST00000531141 DCSTAMPQ9H295 470 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 GID8Q9NWU2 228 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 DOK5Q9P104 306 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 SMPXQ9UHP9 88 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 HHLA2Q9UM44 414 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 ANGPT4Q9Y264 503 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 FIS1Q9Y3D6 152 aa1.28□□□□□ -2.2
CD44-233ENST00000531141 PLECQ15149 4684 aaKnown RBP1.28□□□□□ -2.2
CD44-233ENST00000531141 DNAH9Q9NYC9 4486 aa1.28□□□□□ -2.21
CD44-233ENST00000531141 MUC2Q02817 5179 aa1.27□□□□□ -2.21
CD44-233ENST00000531141 TRAV8-1A0A0A6YYK1 113 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms