RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 CBLN1P23435 193 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 NPPCP23582 126 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 CRYBB3P26998 211 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 FFAR4Q5NUL3 377 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 TMEM37Q8WXS4 190 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 GNPNAT1Q96EK6 184 aaPredicted RBP12.35□□□□□ -0.43
LSM1-204ENST00000522515 PSMG3Q9BT73 122 aaPredicted RBP12.35□□□□□ -0.43
LSM1-204ENST00000522515 SLC25A32Q9H2D1 315 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 IGHV7-4-1A0A0J9YVY3 117 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 COX7A2P2O60397 106 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 C8orf88P0DMB2 117 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 PXDC1Q5TGL8 231 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 BAP18Q8IXM2 172 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 STOML3Q8TAV4 291 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 UHRF2Q96PU4 802 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 ELOVL1Q9BW60 279 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 SMPXQ9UHP9 88 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 U3KQE9 123 aa12.35□□□□□ -0.43
LSM1-204ENST00000522515 IGHV3-66A0A0C4DH42 116 aa12.34□□□□□ -0.43
LSM1-204ENST00000522515 TPT1P13693 172 aaKnown RBP12.34□□□□□ -0.43
LSM1-204ENST00000522515 C4BPBP20851 252 aa12.34□□□□□ -0.43
LSM1-204ENST00000522515 EIF5AP63241 154 aaKnown RBP12.34□□□□□ -0.43
LSM1-204ENST00000522515 SLC51BQ86UW2 128 aa12.34□□□□□ -0.43
LSM1-204ENST00000522515 OR2G3Q8NGZ4 309 aa12.34□□□□□ -0.43
LSM1-204ENST00000522515 PPP1R14BQ96C90 147 aa12.34□□□□□ -0.43
LSM1-204ENST00000522515 DNAJC4Q9NNZ3 241 aa12.34□□□□□ -0.43
LSM1-204ENST00000522515 HIGD1AQ9Y241 93 aa12.34□□□□□ -0.43
LSM1-204ENST00000522515 SELENOKQ9Y6D0 94 aa12.34□□□□□ -0.43
LSM1-204ENST00000522515 SEC14L6B5MCN3 397 aa12.33□□□□□ -0.44
LSM1-204ENST00000522515 SPP1P10451 314 aa12.33□□□□□ -0.44
LSM1-204ENST00000522515 OR1L4Q8NGR5 311 aa12.33□□□□□ -0.44
LSM1-204ENST00000522515 ST8SIA2Q92186 375 aa12.33□□□□□ -0.44
LSM1-204ENST00000522515 MARC2Q969Z3 335 aa12.33□□□□□ -0.44
LSM1-204ENST00000522515 RHPN1-AS1Q9BWJ2 59 aa12.33□□□□□ -0.44
LSM1-204ENST00000522515 VSIRQ9H7M9 311 aa12.33□□□□□ -0.44
LSM1-204ENST00000522515 ELOA3CA0A087WX78 387 aaPredicted RBP12.32□□□□□ -0.44
LSM1-204ENST00000522515 CHEK1O14757 476 aa12.32□□□□□ -0.44
LSM1-204ENST00000522515 BUB3O43684 328 aa12.32□□□□□ -0.44
LSM1-204ENST00000522515 SAP30O75446 220 aa12.32□□□□□ -0.44
LSM1-204ENST00000522515 SERF2P84101 59 aa12.32□□□□□ -0.44
LSM1-204ENST00000522515 PRR31Q5SQ13 230 aa12.32□□□□□ -0.44
LSM1-204ENST00000522515 C10orf113Q5VZT2 155 aa12.32□□□□□ -0.44
LSM1-204ENST00000522515 LINC00305Q7Z4B0 112 aa12.32□□□□□ -0.44
LSM1-204ENST00000522515 PFDN5Q99471 154 aa12.32□□□□□ -0.44
LSM1-204ENST00000522515 SLC25A39Q9BZJ4 359 aaPredicted RBP12.32□□□□□ -0.44
LSM1-204ENST00000522515 SIGLEC8Q9NYZ4 499 aa12.32□□□□□ -0.44
LSM1-204ENST00000522515 MLXQ9UH92 298 aa12.32□□□□□ -0.44
LSM1-204ENST00000522515 H3BRN7 92 aa12.31□□□□□ -0.44
LSM1-204ENST00000522515 IGLL1P15814 213 aa12.31□□□□□ -0.44
LSM1-204ENST00000522515 RAB2AP61019 212 aa12.31□□□□□ -0.44
LSM1-204ENST00000522515 MORN5Q5VZ52 161 aa12.31□□□□□ -0.44
LSM1-204ENST00000522515 LEMD1Q68G75 181 aa12.31□□□□□ -0.44
LSM1-204ENST00000522515 GATAD1Q8WUU5 269 aa12.31□□□□□ -0.44
LSM1-204ENST00000522515 SHANK2-AS3Q9BTD1 123 aa12.31□□□□□ -0.44
LSM1-204ENST00000522515 SCRT1Q9BWW7 348 aa12.31□□□□□ -0.44
LSM1-204ENST00000522515 SEPSECSQ9HD40 501 aaKnown RBP12.31□□□□□ -0.44
LSM1-204ENST00000522515 A0A1W2PS18 150 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 ZNF98A6NK75 572 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 SEC11BP0C7V7 166 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 M6PRP20645 277 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 ACOT6Q3I5F7 207 aaPredicted RBP12.3□□□□□ -0.44
LSM1-204ENST00000522515 FAM78BQ5VT40 261 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 TMED6Q8WW62 240 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 NARS2Q96I59 477 aaKnown RBP12.3□□□□□ -0.44
LSM1-204ENST00000522515 RNF2Q99496 336 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 PLA2G2EQ9NZK7 142 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 DNHD1Q96M86 4753 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 PKD1L1Q8TDX9 2849 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 C9orf66Q5T8R8 295 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 SPATA31B1PQ5VZV4 182 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 C16orf54Q6UWD8 224 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 DYNLRB2Q8TF09 96 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 MCRIP2Q9BUT9 160 aaKnown RBP12.3□□□□□ -0.44
LSM1-204ENST00000522515 SLC25A22Q9H936 323 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 PFDN2Q9UHV9 154 aa12.3□□□□□ -0.44
LSM1-204ENST00000522515 TRAV5A0A0B4J249 113 aa12.29□□□□□ -0.44
LSM1-204ENST00000522515 DEFB114Q30KQ6 69 aa12.29□□□□□ -0.44
LSM1-204ENST00000522515 OR10G4Q8NGN3 311 aa12.29□□□□□ -0.44
LSM1-204ENST00000522515 OR10G9Q8NGN4 311 aa12.29□□□□□ -0.44
LSM1-204ENST00000522515 OR10G7Q8NGN6 311 aa12.29□□□□□ -0.44
LSM1-204ENST00000522515 GLMPQ8WWB7 406 aa12.29□□□□□ -0.44
LSM1-204ENST00000522515 GRAMD2BQ96HH9 432 aa12.29□□□□□ -0.44
LSM1-204ENST00000522515 RPRMQ9NS64 109 aa12.29□□□□□ -0.44
LSM1-204ENST00000522515 EIF3GO75821 320 aaKnown RBP eCLIP12.28□□□□□ -0.44
LSM1-204ENST00000522515 IGLV1-51P01701 117 aa12.28□□□□□ -0.44
LSM1-204ENST00000522515 MBP02144 154 aa12.28□□□□□ -0.44
LSM1-204ENST00000522515 BMI1P35226 326 aa12.28□□□□□ -0.44
LSM1-204ENST00000522515 TMEM41BQ5BJD5 291 aa12.28□□□□□ -0.44
LSM1-204ENST00000522515 S100A7AQ86SG5 101 aa12.28□□□□□ -0.44
LSM1-204ENST00000522515 RPP25LQ8N5L8 163 aaKnown RBP12.28□□□□□ -0.44
LSM1-204ENST00000522515 TMEM231Q9H6L2 316 aa12.28□□□□□ -0.44
LSM1-204ENST00000522515 FUT9Q9Y231 359 aa12.28□□□□□ -0.44
LSM1-204ENST00000522515 S100A7P31151 101 aa12.27□□□□□ -0.44
LSM1-204ENST00000522515 INSL3P51460 131 aa12.27□□□□□ -0.44
LSM1-204ENST00000522515 RHOBP62745 196 aa12.27□□□□□ -0.44
LSM1-204ENST00000522515 CD300EQ496F6 205 aaPredicted RBP12.27□□□□□ -0.44
LSM1-204ENST00000522515 AKR1C8PQ5T2L2 129 aa12.27□□□□□ -0.44
LSM1-204ENST00000522515 C1orf194Q5T5A4 169 aa12.27□□□□□ -0.44
LSM1-204ENST00000522515 FAM122CQ6P4D5 195 aa12.27□□□□□ -0.44
LSM1-204ENST00000522515 MIR17HGQ75NE6 70 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms