RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 TMEM213A2RRL7 107 aa15.29■□□□□ 0.04
USP53-208ENST00000514305 C1QBP02746 253 aa15.29■□□□□ 0.04
USP53-208ENST00000514305 RPL29P47914 159 aaKnown RBP15.29■□□□□ 0.04
USP53-208ENST00000514305 EIF2B2P49770 351 aaKnown RBP15.29■□□□□ 0.04
USP53-208ENST00000514305 LYZP61626 148 aa15.29■□□□□ 0.04
USP53-208ENST00000514305 ZNF345Q14585 488 aa15.29■□□□□ 0.04
USP53-208ENST00000514305 LAMTOR1Q6IAA8 161 aa15.29■□□□□ 0.04
USP53-208ENST00000514305 PPP1R14BQ96C90 147 aa15.29■□□□□ 0.04
USP53-208ENST00000514305 WDR61Q9GZS3 305 aaKnown RBP15.29■□□□□ 0.04
USP53-208ENST00000514305 IGHV7-4-1A0A0J9YVY3 117 aa15.28■□□□□ 0.04
USP53-208ENST00000514305 A0A1B0GVG6 124 aa15.28■□□□□ 0.04
USP53-208ENST00000514305 SMLR1H3BR10 107 aa15.28■□□□□ 0.04
USP53-208ENST00000514305 NHLRC4P0CG21 123 aaPredicted RBP15.28■□□□□ 0.04
USP53-208ENST00000514305 C8orf88P0DMB2 117 aa15.28■□□□□ 0.04
USP53-208ENST00000514305 OR1L4Q8NGR5 311 aa15.28■□□□□ 0.04
USP53-208ENST00000514305 PRR25Q96S07 402 aa15.28■□□□□ 0.04
USP53-208ENST00000514305 FBXL17Q9UF56 701 aa15.28■□□□□ 0.04
USP53-208ENST00000514305 SMPXQ9UHP9 88 aa15.28■□□□□ 0.04
USP53-208ENST00000514305 ELOA3CA0A087WX78 387 aaPredicted RBP15.27■□□□□ 0.04
USP53-208ENST00000514305 G3V3Q6 166 aa15.27■□□□□ 0.04
USP53-208ENST00000514305 HYPMO75409 117 aa15.27■□□□□ 0.04
USP53-208ENST00000514305 LINC00869P0C866 280 aa15.27■□□□□ 0.04
USP53-208ENST00000514305 C4BPBP20851 252 aa15.27■□□□□ 0.04
USP53-208ENST00000514305 CRYBB3P26998 211 aa15.27■□□□□ 0.04
USP53-208ENST00000514305 MGST2Q99735 147 aa15.27■□□□□ 0.04
USP53-208ENST00000514305 RNF222A6NCQ9 220 aa15.26■□□□□ 0.03
USP53-208ENST00000514305 ZNF207O43670 478 aaKnown RBP15.26■□□□□ 0.03
USP53-208ENST00000514305 JTBO76095 146 aa15.26■□□□□ 0.03
USP53-208ENST00000514305 ORM2P19652 201 aa15.26■□□□□ 0.03
USP53-208ENST00000514305 PLP1P60201 277 aa15.26■□□□□ 0.03
USP53-208ENST00000514305 LCN12Q6JVE5 192 aa15.26■□□□□ 0.03
USP53-208ENST00000514305 PFDN5Q99471 154 aa15.26■□□□□ 0.03
USP53-208ENST00000514305 NEURL2Q9BR09 285 aa15.26■□□□□ 0.03
USP53-208ENST00000514305 RHPN1-AS1Q9BWJ2 59 aa15.26■□□□□ 0.03
USP53-208ENST00000514305 GGTLC1Q9BX51 225 aa15.26■□□□□ 0.03
USP53-208ENST00000514305 NPCDR1Q9BY65 106 aa15.26■□□□□ 0.03
USP53-208ENST00000514305 IGHV3OR16-8A0A075B7F1 116 aa15.25■□□□□ 0.03
USP53-208ENST00000514305 TRAV25A0A0B4J276 109 aa15.25■□□□□ 0.03
USP53-208ENST00000514305 KANTRA0A1W2PQU2 76 aa15.25■□□□□ 0.03
USP53-208ENST00000514305 A6NJY4 79 aa15.25■□□□□ 0.03
USP53-208ENST00000514305 B2MP61769 119 aa15.25■□□□□ 0.03
USP53-208ENST00000514305 EIF5AP63241 154 aaKnown RBP15.25■□□□□ 0.03
USP53-208ENST00000514305 OPCMLQ14982 345 aa15.25■□□□□ 0.03
USP53-208ENST00000514305 ZFP69Q49AA0 526 aa15.25■□□□□ 0.03
USP53-208ENST00000514305 IL34Q6ZMJ4 242 aa15.25■□□□□ 0.03
USP53-208ENST00000514305 RBPMS2Q6ZRY4 209 aaKnown RBP15.25■□□□□ 0.03
USP53-208ENST00000514305 KCNRGQ8N5I3 272 aa15.25■□□□□ 0.03
USP53-208ENST00000514305 OR1B1Q8NGR6 318 aa15.25■□□□□ 0.03
USP53-208ENST00000514305 ARPC5LQ9BPX5 153 aa15.25■□□□□ 0.03
USP53-208ENST00000514305 ARL6Q9H0F7 186 aa15.25■□□□□ 0.03
USP53-208ENST00000514305 ZNF256Q9Y2P7 627 aaPredicted RBP15.25■□□□□ 0.03
USP53-208ENST00000514305 DNAH9Q9NYC9 4486 aa15.25■□□□□ 0.03
USP53-208ENST00000514305 COX7A2P2O60397 106 aa15.24■□□□□ 0.03
USP53-208ENST00000514305 PFDN1O60925 122 aa15.24■□□□□ 0.03
USP53-208ENST00000514305 IGLV1-51P01701 117 aa15.24■□□□□ 0.03
USP53-208ENST00000514305 OR5G3P0C626 314 aa15.24■□□□□ 0.03
USP53-208ENST00000514305 PAFAH1B2P68402 229 aa15.24■□□□□ 0.03
USP53-208ENST00000514305 USF2Q15853 346 aaPredicted RBP15.24■□□□□ 0.03
USP53-208ENST00000514305 HIGD1AQ9Y241 93 aa15.24■□□□□ 0.03
USP53-208ENST00000514305 PXMP4Q9Y6I8 212 aa15.24■□□□□ 0.03
USP53-208ENST00000514305 HELTA6NFD8 242 aa15.23■□□□□ 0.03
USP53-208ENST00000514305 CHEK1O14757 476 aa15.23■□□□□ 0.03
USP53-208ENST00000514305 GATA2P23769 480 aaPredicted RBP15.23■□□□□ 0.03
USP53-208ENST00000514305 DEFB114Q30KQ6 69 aa15.23■□□□□ 0.03
USP53-208ENST00000514305 C1orf194Q5T5A4 169 aa15.23■□□□□ 0.03
USP53-208ENST00000514305 STPG3Q8N7X2 389 aa15.23■□□□□ 0.03
USP53-208ENST00000514305 OR11H4Q8NGC9 324 aa15.23■□□□□ 0.03
USP53-208ENST00000514305 GNPNAT1Q96EK6 184 aaPredicted RBP15.23■□□□□ 0.03
USP53-208ENST00000514305 VSIRQ9H7M9 311 aa15.23■□□□□ 0.03
USP53-208ENST00000514305 DNAJC4Q9NNZ3 241 aa15.23■□□□□ 0.03
USP53-208ENST00000514305 SLC39A9Q9NUM3 307 aa15.23■□□□□ 0.03
USP53-208ENST00000514305 TIMM9Q9Y5J7 89 aa15.23■□□□□ 0.03
USP53-208ENST00000514305 U3KQK5 164 aa15.23■□□□□ 0.03
USP53-208ENST00000514305 MIC13Q5XKP0 118 aa15.22■□□□□ 0.03
USP53-208ENST00000514305 ZNF414Q96IQ9 312 aa15.22■□□□□ 0.03
USP53-208ENST00000514305 GPR82Q96P67 336 aa15.22■□□□□ 0.03
USP53-208ENST00000514305 RNF2Q99496 336 aa15.22■□□□□ 0.03
USP53-208ENST00000514305 C10orf113Q5VZT2 155 aa15.21■□□□□ 0.03
USP53-208ENST00000514305 TMEM182Q6ZP80 229 aaPredicted RBP15.21■□□□□ 0.03
USP53-208ENST00000514305 GATAD1Q8WUU5 269 aa15.21■□□□□ 0.03
USP53-208ENST00000514305 ARV1Q9H2C2 271 aa15.21■□□□□ 0.03
USP53-208ENST00000514305 WFDC1Q9HC57 220 aa15.21■□□□□ 0.03
USP53-208ENST00000514305 U3KQE9 123 aa15.21■□□□□ 0.03
USP53-208ENST00000514305 TENM3Q9P273 2699 aa15.2■□□□□ 0.02
USP53-208ENST00000514305 MBP02144 154 aa15.2■□□□□ 0.02
USP53-208ENST00000514305 RPL11P62913 178 aaKnown RBP15.2■□□□□ 0.02
USP53-208ENST00000514305 SERF2P84101 59 aa15.2■□□□□ 0.02
USP53-208ENST00000514305 ST8SIA2Q92186 375 aa15.2■□□□□ 0.02
USP53-208ENST00000514305 DOK5Q9P104 306 aa15.2■□□□□ 0.02
USP53-208ENST00000514305 MLXQ9UH92 298 aa15.2■□□□□ 0.02
USP53-208ENST00000514305 NBEAL2Q6ZNJ1 2754 aa15.2■□□□□ 0.02
USP53-208ENST00000514305 IGHV3-49A0A0A0MS15 119 aa15.19■□□□□ 0.02
USP53-208ENST00000514305 BUB3O43684 328 aa15.19■□□□□ 0.02
USP53-208ENST00000514305 ACOT6Q3I5F7 207 aaPredicted RBP15.19■□□□□ 0.02
USP53-208ENST00000514305 CD300EQ496F6 205 aaPredicted RBP15.19■□□□□ 0.02
USP53-208ENST00000514305 C16orf54Q6UWD8 224 aa15.19■□□□□ 0.02
USP53-208ENST00000514305 ADAMTSL5Q6ZMM2 481 aa15.19■□□□□ 0.02
USP53-208ENST00000514305 TMUB2Q71RG4 321 aa15.19■□□□□ 0.02
USP53-208ENST00000514305 TCF24Q7RTU0 167 aa15.19■□□□□ 0.02
USP53-208ENST00000514305 OR8I2Q8N0Y5 310 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms