RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 OR2F1Q13607 317 aa12.23□□□□□ -0.45
SF3A1-209ENST00000496189 WFDC3Q8IUB2 231 aa12.23□□□□□ -0.45
SF3A1-209ENST00000496189 STXBP6Q8NFX7 210 aa12.23□□□□□ -0.45
SF3A1-209ENST00000496189 PPP1R14BQ96C90 147 aa12.23□□□□□ -0.45
SF3A1-209ENST00000496189 TM2D3Q9BRN9 247 aa12.23□□□□□ -0.45
SF3A1-209ENST00000496189 GGTLC1Q9BX51 225 aa12.23□□□□□ -0.45
SF3A1-209ENST00000496189 TRAV2A0A0B4J234 112 aa12.22□□□□□ -0.45
SF3A1-209ENST00000496189 H0YIZ8 118 aa12.22□□□□□ -0.45
SF3A1-209ENST00000496189 APOC4P55056 127 aa12.22□□□□□ -0.45
SF3A1-209ENST00000496189 RAP2BP61225 183 aa12.22□□□□□ -0.45
SF3A1-209ENST00000496189 LYZP61626 148 aa12.22□□□□□ -0.45
SF3A1-209ENST00000496189 EWSR1Q01844 656 aaKnown RBP eCLIP12.22□□□□□ -0.45
SF3A1-209ENST00000496189 CYP2G1PQ6ZSU1 146 aa12.22□□□□□ -0.45
SF3A1-209ENST00000496189 S100A7AQ86SG5 101 aa12.22□□□□□ -0.45
SF3A1-209ENST00000496189 RNF126Q9BV68 326 aa12.22□□□□□ -0.45
SF3A1-209ENST00000496189 TMEM147Q9BVK8 224 aa12.22□□□□□ -0.45
SF3A1-209ENST00000496189 MS4A6AQ9H2W1 248 aa12.22□□□□□ -0.45
SF3A1-209ENST00000496189 USF2Q15853 346 aaPredicted RBP12.21□□□□□ -0.45
SF3A1-209ENST00000496189 ODF3L2Q3SX64 289 aa12.21□□□□□ -0.45
SF3A1-209ENST00000496189 FAM90A2PQ658T7 463 aa12.21□□□□□ -0.45
SF3A1-209ENST00000496189 ZNF546Q86UE3 836 aa12.21□□□□□ -0.45
SF3A1-209ENST00000496189 MBD2Q9UBB5 411 aa12.21□□□□□ -0.45
SF3A1-209ENST00000496189 COL7A1Q02388 2944 aa12.2□□□□□ -0.46
SF3A1-209ENST00000496189 RBMY1BA6NDE4 496 aaKnown RBP12.2□□□□□ -0.46
SF3A1-209ENST00000496189 RBMY1EA6NEQ0 496 aaKnown RBP12.2□□□□□ -0.46
SF3A1-209ENST00000496189 RBMY1DP0C7P1 496 aaKnown RBP12.2□□□□□ -0.46
SF3A1-209ENST00000496189 OR5C1Q8NGR4 320 aa12.2□□□□□ -0.46
SF3A1-209ENST00000496189 FBXL17Q9UF56 701 aa12.2□□□□□ -0.46
SF3A1-209ENST00000496189 SLC45A2Q9UMX9 530 aa12.2□□□□□ -0.46
SF3A1-209ENST00000496189 U3KQE9 123 aa12.2□□□□□ -0.46
SF3A1-209ENST00000496189 LYL1P12980 280 aa12.19□□□□□ -0.46
SF3A1-209ENST00000496189 ORM2P19652 201 aa12.19□□□□□ -0.46
SF3A1-209ENST00000496189 RPL12P30050 165 aaKnown RBP12.19□□□□□ -0.46
SF3A1-209ENST00000496189 NHLH2Q02577 135 aa12.19□□□□□ -0.46
SF3A1-209ENST00000496189 VWC2Q2TAL6 325 aa12.19□□□□□ -0.46
SF3A1-209ENST00000496189 PXDC1Q5TGL8 231 aa12.19□□□□□ -0.46
SF3A1-209ENST00000496189 C16orf54Q6UWD8 224 aa12.19□□□□□ -0.46
SF3A1-209ENST00000496189 SIGLEC15Q6ZMC9 328 aa12.19□□□□□ -0.46
SF3A1-209ENST00000496189 LINC00322Q6ZN03 302 aaPredicted RBP12.19□□□□□ -0.46
SF3A1-209ENST00000496189 DNAH9Q9NYC9 4486 aa12.18□□□□□ -0.46
SF3A1-209ENST00000496189 UBE2L5PA0A1B0GUS4 154 aa12.18□□□□□ -0.46
SF3A1-209ENST00000496189 AGPAT2O15120 278 aa12.18□□□□□ -0.46
SF3A1-209ENST00000496189 MPDU1O75352 247 aa12.18□□□□□ -0.46
SF3A1-209ENST00000496189 LINC00869P0C866 280 aa12.18□□□□□ -0.46
SF3A1-209ENST00000496189 CAMLGP49069 296 aa12.18□□□□□ -0.46
SF3A1-209ENST00000496189 STPG3Q8N7X2 389 aa12.18□□□□□ -0.46
SF3A1-209ENST00000496189 OR1B1Q8NGR6 318 aa12.18□□□□□ -0.46
SF3A1-209ENST00000496189 MAP6D1Q9H9H5 199 aa12.18□□□□□ -0.46
SF3A1-209ENST00000496189 RNF24Q9Y225 148 aa12.18□□□□□ -0.46
SF3A1-209ENST00000496189 WDR83OSQ9Y284 106 aa12.18□□□□□ -0.46
SF3A1-209ENST00000496189 UBE2CO00762 179 aa12.17□□□□□ -0.46
SF3A1-209ENST00000496189 BUB3O43684 328 aa12.17□□□□□ -0.46
SF3A1-209ENST00000496189 HYPMO75409 117 aa12.17□□□□□ -0.46
SF3A1-209ENST00000496189 FGF7P21781 194 aa12.17□□□□□ -0.46
SF3A1-209ENST00000496189 GATA2P23769 480 aaPredicted RBP12.17□□□□□ -0.46
SF3A1-209ENST00000496189 SNRPD3P62318 126 aaKnown RBP12.17□□□□□ -0.46
SF3A1-209ENST00000496189 C1orf194Q5T5A4 169 aa12.17□□□□□ -0.46
SF3A1-209ENST00000496189 APRG1Q8IVJ8 170 aa12.17□□□□□ -0.46
SF3A1-209ENST00000496189 HSPB11Q9Y547 144 aa12.17□□□□□ -0.46
SF3A1-209ENST00000496189 KIR2DL5BA0A0G2JN68 375 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 KIR2DL5BA0A0G2JPC4 375 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 OR5G3P0C626 314 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 DEFB131AP59861 70 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 PLP1P60201 277 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 CLINT1Q14677 625 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 TMEM182Q6ZP80 229 aaPredicted RBP12.16□□□□□ -0.46
SF3A1-209ENST00000496189 Q6ZRG5 221 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 KIR2DL5AQ8N109 375 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 INO80EQ8NBZ0 244 aaPredicted RBP12.16□□□□□ -0.46
SF3A1-209ENST00000496189 OR2T35Q8NGX2 323 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 KIR2DL5BQ8NHK3 375 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 GLMPQ8WWB7 406 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 MGST2Q99735 147 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 ARL6Q9H0F7 186 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 NRN1Q9NPD7 142 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 HIGD1AQ9Y241 93 aa12.16□□□□□ -0.46
SF3A1-209ENST00000496189 K7EQG2 157 aa12.15□□□□□ -0.46
SF3A1-209ENST00000496189 IFNA5P01569 189 aa12.15□□□□□ -0.46
SF3A1-209ENST00000496189 RPL35AP18077 110 aaKnown RBP12.15□□□□□ -0.46
SF3A1-209ENST00000496189 STHQ8IWL8 128 aa12.15□□□□□ -0.46
SF3A1-209ENST00000496189 OR8I2Q8N0Y5 310 aa12.15□□□□□ -0.46
SF3A1-209ENST00000496189 ZNF709Q8N972 641 aa12.15□□□□□ -0.46
SF3A1-209ENST00000496189 CHAC2Q8WUX2 184 aa12.15□□□□□ -0.46
SF3A1-209ENST00000496189 CITED4Q96RK1 184 aa12.15□□□□□ -0.46
SF3A1-209ENST00000496189 ATP5SQ99766 215 aa12.15□□□□□ -0.46
SF3A1-209ENST00000496189 KCNIP2Q9NS61 270 aa12.15□□□□□ -0.46
SF3A1-209ENST00000496189 ELOA3CA0A087WX78 387 aaPredicted RBP12.14□□□□□ -0.47
SF3A1-209ENST00000496189 COX7A2P2O60397 106 aa12.14□□□□□ -0.47
SF3A1-209ENST00000496189 ZNF688P0C7X2 276 aa12.14□□□□□ -0.47
SF3A1-209ENST00000496189 RPL29P47914 159 aaKnown RBP12.14□□□□□ -0.47
SF3A1-209ENST00000496189 SAMD13Q5VXD3 122 aa12.14□□□□□ -0.47
SF3A1-209ENST00000496189 SCGB1C1Q8TD33 95 aa12.14□□□□□ -0.47
SF3A1-209ENST00000496189 GPR82Q96P67 336 aa12.14□□□□□ -0.47
SF3A1-209ENST00000496189 DOK5Q9P104 306 aa12.14□□□□□ -0.47
SF3A1-209ENST00000496189 ZNF98A6NK75 572 aa12.13□□□□□ -0.47
SF3A1-209ENST00000496189 C17orf112F2Z3M2 114 aa12.13□□□□□ -0.47
SF3A1-209ENST00000496189 ID1P41134 155 aa12.13□□□□□ -0.47
SF3A1-209ENST00000496189 GALR1P47211 349 aa12.13□□□□□ -0.47
SF3A1-209ENST00000496189 OPCMLQ14982 345 aa12.13□□□□□ -0.47
SF3A1-209ENST00000496189 Q6ZWC4 215 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms