RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 K7EPK0 472 aa13.26□□□□□ -0.29
COL9A3-214ENST00000490398 CA1P00915 261 aaPredicted RBP13.26□□□□□ -0.29
COL9A3-214ENST00000490398 AP2S1P53680 142 aaPredicted RBP13.26□□□□□ -0.29
COL9A3-214ENST00000490398 ACTL10Q5JWF8 245 aa13.26□□□□□ -0.29
COL9A3-214ENST00000490398 TMEM144Q7Z5S9 345 aa13.26□□□□□ -0.29
COL9A3-214ENST00000490398 RAB40CQ96S21 281 aa13.26□□□□□ -0.29
COL9A3-214ENST00000490398 LSM5Q9Y4Y9 91 aaKnown RBP13.26□□□□□ -0.29
COL9A3-214ENST00000490398 C5orf51A6NDU8 294 aa13.25□□□□□ -0.29
COL9A3-214ENST00000490398 TSC22D2O75157 780 aa13.25□□□□□ -0.29
COL9A3-214ENST00000490398 IL5P05113 134 aa13.25□□□□□ -0.29
COL9A3-214ENST00000490398 FABP1P07148 127 aa13.25□□□□□ -0.29
COL9A3-214ENST00000490398 ORM2P19652 201 aa13.25□□□□□ -0.29
COL9A3-214ENST00000490398 C4BPBP20851 252 aa13.25□□□□□ -0.29
COL9A3-214ENST00000490398 TAS2R30P59541 319 aa13.25□□□□□ -0.29
COL9A3-214ENST00000490398 IL15RAQ13261 267 aa13.25□□□□□ -0.29
COL9A3-214ENST00000490398 CYP2G1PQ6ZSU1 146 aa13.25□□□□□ -0.29
COL9A3-214ENST00000490398 NRARPQ7Z6K4 114 aa13.25□□□□□ -0.29
COL9A3-214ENST00000490398 STHQ8IWL8 128 aa13.25□□□□□ -0.29
COL9A3-214ENST00000490398 AGRNO00468 2067 aa13.25□□□□□ -0.29
COL9A3-214ENST00000490398 EPPK1P58107 5090 aaKnown RBP13.24□□□□□ -0.29
COL9A3-214ENST00000490398 DLK1P80370 383 aa13.24□□□□□ -0.29
COL9A3-214ENST00000490398 ENKURQ8TC29 256 aa13.24□□□□□ -0.29
COL9A3-214ENST00000490398 C2orf50Q96LR7 162 aa13.24□□□□□ -0.29
COL9A3-214ENST00000490398 SLC25A32Q9H2D1 315 aa13.24□□□□□ -0.29
COL9A3-214ENST00000490398 DOK5Q9P104 306 aa13.24□□□□□ -0.29
COL9A3-214ENST00000490398 FAM24AA6NFZ4 105 aa13.23□□□□□ -0.29
COL9A3-214ENST00000490398 SOCS3O14543 225 aa13.23□□□□□ -0.29
COL9A3-214ENST00000490398 SIX6O95475 246 aa13.23□□□□□ -0.29
COL9A3-214ENST00000490398 SLC38A11Q08AI6 406 aa13.23□□□□□ -0.29
COL9A3-214ENST00000490398 BPIFCQ8NFQ6 507 aa13.23□□□□□ -0.29
COL9A3-214ENST00000490398 OR1B1Q8NGR6 318 aa13.23□□□□□ -0.29
COL9A3-214ENST00000490398 IL17DQ8TAD2 202 aa13.23□□□□□ -0.29
COL9A3-214ENST00000490398 PPP1R14BQ96C90 147 aa13.23□□□□□ -0.29
COL9A3-214ENST00000490398 DNAH10Q8IVF4 4471 aa13.22□□□□□ -0.29
COL9A3-214ENST00000490398 ZNF98A6NK75 572 aa13.22□□□□□ -0.29
COL9A3-214ENST00000490398 C1orf194Q5T5A4 169 aa13.22□□□□□ -0.29
COL9A3-214ENST00000490398 GDF5OSQ5U4N7 250 aa13.22□□□□□ -0.29
COL9A3-214ENST00000490398 OR10P1Q8NGE3 313 aa13.22□□□□□ -0.29
COL9A3-214ENST00000490398 SCRT1Q9BWW7 348 aa13.22□□□□□ -0.29
COL9A3-214ENST00000490398 SLC25A22Q9H936 323 aa13.22□□□□□ -0.29
COL9A3-214ENST00000490398 BATF3Q9NR55 127 aa13.22□□□□□ -0.29
COL9A3-214ENST00000490398 DNAH6Q9C0G6 4158 aa13.21□□□□□ -0.29
COL9A3-214ENST00000490398 CFDP00746 253 aaPredicted RBP13.21□□□□□ -0.29
COL9A3-214ENST00000490398 NUP62P37198 522 aaPredicted RBP13.21□□□□□ -0.29
COL9A3-214ENST00000490398 RAB32Q13637 225 aa13.21□□□□□ -0.29
COL9A3-214ENST00000490398 OR8I2Q8N0Y5 310 aa13.21□□□□□ -0.29
COL9A3-214ENST00000490398 OR11H2Q8NH07 326 aa13.21□□□□□ -0.29
COL9A3-214ENST00000490398 RARRES2Q99969 163 aa13.21□□□□□ -0.29
COL9A3-214ENST00000490398 NPVFQ9HCQ7 196 aa13.21□□□□□ -0.29
COL9A3-214ENST00000490398 CLEC5AQ9NY25 188 aa13.21□□□□□ -0.29
COL9A3-214ENST00000490398 KMT2AQ03164 3969 aa13.21□□□□□ -0.29
COL9A3-214ENST00000490398 L7N2F9 121 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 DEFB4AO15263 64 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 CST7O76096 145 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 LINC00869P0C866 280 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 BCAP31P51572 246 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 S100A10P60903 97 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 VAMP2P63027 116 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 PMS2P11Q13670 270 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 PATE2Q6UY27 113 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 GATAD1Q8WUU5 269 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 C20orf173Q96LM9 149 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 LINC00052Q96N35 136 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 UHRF2Q96PU4 802 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 TMEM147Q9BVK8 224 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 SEPSECSQ9HD40 501 aaKnown RBP13.2□□□□□ -0.3
COL9A3-214ENST00000490398 FBXL17Q9UF56 701 aa13.2□□□□□ -0.3
COL9A3-214ENST00000490398 IGSF23A1L1A6 192 aa13.19□□□□□ -0.3
COL9A3-214ENST00000490398 FNDC10F2Z333 226 aa13.19□□□□□ -0.3
COL9A3-214ENST00000490398 INMT-MINDY4F8WBC2 141 aa13.19□□□□□ -0.3
COL9A3-214ENST00000490398 H3BMM0 161 aa13.19□□□□□ -0.3
COL9A3-214ENST00000490398 H3BRN7 92 aa13.19□□□□□ -0.3
COL9A3-214ENST00000490398 DEDDO75618 318 aa13.19□□□□□ -0.3
COL9A3-214ENST00000490398 CAV2P51636 162 aa13.19□□□□□ -0.3
COL9A3-214ENST00000490398 SNRPD3P62318 126 aaKnown RBP13.19□□□□□ -0.3
COL9A3-214ENST00000490398 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.19□□□□□ -0.3
COL9A3-214ENST00000490398 MGST2Q99735 147 aa13.19□□□□□ -0.3
COL9A3-214ENST00000490398 RSG1Q9BU20 258 aa13.19□□□□□ -0.3
COL9A3-214ENST00000490398 SLC25A39Q9BZJ4 359 aaPredicted RBP13.19□□□□□ -0.3
COL9A3-214ENST00000490398 MGAT4CQ9UBM8 478 aa13.19□□□□□ -0.3
COL9A3-214ENST00000490398 PFDN2Q9UHV9 154 aa13.19□□□□□ -0.3
COL9A3-214ENST00000490398 SLC45A2Q9UMX9 530 aa13.19□□□□□ -0.3
COL9A3-214ENST00000490398 F6UB75 175 aa13.18□□□□□ -0.3
COL9A3-214ENST00000490398 GOSR2O14653 212 aa13.18□□□□□ -0.3
COL9A3-214ENST00000490398 PLP1P60201 277 aa13.18□□□□□ -0.3
COL9A3-214ENST00000490398 IGFL4Q6B9Z1 124 aa13.18□□□□□ -0.3
COL9A3-214ENST00000490398 TEPPQ6URK8 271 aa13.18□□□□□ -0.3
COL9A3-214ENST00000490398 TMEM217Q8N7C4 229 aa13.18□□□□□ -0.3
COL9A3-214ENST00000490398 CSNK1G2-AS1Q8NCQ2 148 aa13.18□□□□□ -0.3
COL9A3-214ENST00000490398 LCE6AA0A183 80 aa13.17□□□□□ -0.3
COL9A3-214ENST00000490398 AGPAT2O15120 278 aa13.17□□□□□ -0.3
COL9A3-214ENST00000490398 IGKV3-20P01619 116 aa13.17□□□□□ -0.3
COL9A3-214ENST00000490398 SPP1P10451 314 aa13.17□□□□□ -0.3
COL9A3-214ENST00000490398 MORN3Q6PF18 240 aaPredicted RBP13.17□□□□□ -0.3
COL9A3-214ENST00000490398 MARVELD1Q9BSK0 173 aa13.17□□□□□ -0.3
COL9A3-214ENST00000490398 SHANK2-AS3Q9BTD1 123 aa13.17□□□□□ -0.3
COL9A3-214ENST00000490398 GGACTQ9BVM4 153 aa13.17□□□□□ -0.3
COL9A3-214ENST00000490398 ARL6Q9H0F7 186 aa13.17□□□□□ -0.3
COL9A3-214ENST00000490398 HIGD1AQ9Y241 93 aa13.17□□□□□ -0.3
COL9A3-214ENST00000490398 TRAV8-2A0A0B4J237 113 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms