RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 TAS2R60P59551 318 aa6.33□□□□□ -1.4
COL17A1-207ENST00000488320 SUPT4H1P63272 117 aaKnown RBP6.33□□□□□ -1.4
COL17A1-207ENST00000488320 BAP18Q8IXM2 172 aa6.33□□□□□ -1.4
COL17A1-207ENST00000488320 SPARTQ8N0X7 666 aa6.33□□□□□ -1.4
COL17A1-207ENST00000488320 RNASEH2CQ8TDP1 164 aaKnown RBP6.33□□□□□ -1.4
COL17A1-207ENST00000488320 RRNAD1Q96FB5 475 aaKnown RBP6.33□□□□□ -1.4
COL17A1-207ENST00000488320 TMEM70Q9BUB7 260 aa6.33□□□□□ -1.4
COL17A1-207ENST00000488320 NDUFB11Q9NX14 153 aa6.33□□□□□ -1.4
COL17A1-207ENST00000488320 LRP1Q07954 4544 aaKnown RBP6.33□□□□□ -1.4
COL17A1-207ENST00000488320 GAGE12BA1L429 117 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 A8MTW9 85 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 GAGE7O76087 117 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 GAGE12FP0CL80 117 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 GAGE12GP0CL81 117 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 GAGE12IP0CL82 117 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 ELK1P19419 428 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 HOXA5P20719 270 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 HLA-DMAP28067 261 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 MEOX2P50222 304 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 SPCS3P61009 180 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 LYZP61626 148 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 RHOBP62745 196 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 MXD1Q05195 221 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 GAMTQ14353 236 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 TRIM16LQ309B1 348 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 BSXQ3C1V8 233 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 C2orf83Q53S99 150 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 C1orf194Q5T5A4 169 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 OR8G2PQ6IF36 304 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 TMEM256Q8N2U0 113 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 SLC24A4Q8NFF2 622 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 SLC25A38Q96DW6 304 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 SLC25A39Q9BZJ4 359 aaPredicted RBP6.32□□□□□ -1.4
COL17A1-207ENST00000488320 VCXQ9H320 206 aa6.32□□□□□ -1.4
COL17A1-207ENST00000488320 TXNL4BQ9NX01 149 aaKnown RBP6.32□□□□□ -1.4
COL17A1-207ENST00000488320 FAT3Q8TDW7 4589 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 A0A096LPF7 62 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 ZFP92A6NM28 416 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 CEBPZOSA8MTT3 80 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 NPIPB6E9PJ23 425 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 H3BNG1 76 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 NXPH3O95157 252 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 NXPH4O95158 308 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 RLN2P04090 185 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 P0C879 139 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 PGAM2P15259 253 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 HRH1P35367 487 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 GALR1P47211 349 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 ZNF493Q6ZR52 646 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 TMED4Q7Z7H5 227 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 S100A16Q96FQ6 103 aaKnown RBP6.31□□□□□ -1.4
COL17A1-207ENST00000488320 RSG1Q9BU20 258 aa6.31□□□□□ -1.4
COL17A1-207ENST00000488320 LOC100996750A0A140TA64 210 aa6.3□□□□□ -1.4
COL17A1-207ENST00000488320 ZNF98A6NK75 572 aa6.3□□□□□ -1.4
COL17A1-207ENST00000488320 SNRPGP15A8MWD9 76 aa6.3□□□□□ -1.4
COL17A1-207ENST00000488320 OXTP01178 125 aa6.3□□□□□ -1.4
COL17A1-207ENST00000488320 CLEC2LP0C7M8 214 aa6.3□□□□□ -1.4
COL17A1-207ENST00000488320 SDC2P34741 201 aa6.3□□□□□ -1.4
COL17A1-207ENST00000488320 SCAND1P57086 179 aa6.3□□□□□ -1.4
COL17A1-207ENST00000488320 FGL1Q08830 312 aa6.3□□□□□ -1.4
COL17A1-207ENST00000488320 KLF9Q13886 244 aaPredicted RBP6.3□□□□□ -1.4
COL17A1-207ENST00000488320 NOXA1Q86UR1 476 aa6.3□□□□□ -1.4
COL17A1-207ENST00000488320 CCDC28AQ8IWP9 274 aa6.3□□□□□ -1.4
COL17A1-207ENST00000488320 LINC00528Q8N1L1 170 aa6.3□□□□□ -1.4
COL17A1-207ENST00000488320 TMEM263Q8WUH6 116 aaKnown RBP6.3□□□□□ -1.4
COL17A1-207ENST00000488320 KRTAP4-6Q9BYQ5 205 aa6.3□□□□□ -1.4
COL17A1-207ENST00000488320 SLC25A22Q9H936 323 aa6.3□□□□□ -1.4
COL17A1-207ENST00000488320 SSR3Q9UNL2 185 aa6.3□□□□□ -1.4
COL17A1-207ENST00000488320 SNURFLB1AK76 121 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 BOLA2-SMG1P6H3BVE0 249 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 NAT1P18440 290 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 PRSS3P35030 304 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 UCP3P55916 312 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 ZNF90Q03938 601 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 OR2F1Q13607 317 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 SP6Q3SY56 376 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 IGFL4Q6B9Z1 124 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 LYSMD2Q8IV50 215 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 ZNF738Q8NE65 137 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 OR52E5Q8NH55 327 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 TP53RKQ96S44 253 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.29□□□□□ -1.4
COL17A1-207ENST00000488320 MSRB1Q9NZV6 116 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 FAM30AQ9NZY2 134 aa6.29□□□□□ -1.4
COL17A1-207ENST00000488320 A0A0G2JRQ6 117 aa6.28□□□□□ -1.4
COL17A1-207ENST00000488320 C3orf85A0A1B0GTC6 90 aa6.28□□□□□ -1.4
COL17A1-207ENST00000488320 GABARAPH6UMI1 98 aa6.28□□□□□ -1.4
COL17A1-207ENST00000488320 PSCAO43653 123 aa6.28□□□□□ -1.4
COL17A1-207ENST00000488320 GABARAPO95166 117 aa6.28□□□□□ -1.4
COL17A1-207ENST00000488320 FABP1P07148 127 aa6.28□□□□□ -1.4
COL17A1-207ENST00000488320 PI3P19957 117 aa6.28□□□□□ -1.4
COL17A1-207ENST00000488320 LORP23490 312 aaPredicted RBP6.28□□□□□ -1.4
COL17A1-207ENST00000488320 PIGPP57054 158 aa6.28□□□□□ -1.4
COL17A1-207ENST00000488320 HIST1H1AQ02539 215 aaPredicted RBP6.28□□□□□ -1.4
COL17A1-207ENST00000488320 RNF182Q8N6D2 247 aa6.28□□□□□ -1.4
COL17A1-207ENST00000488320 RNASE8Q8TDE3 154 aaKnown RBP6.28□□□□□ -1.4
COL17A1-207ENST00000488320 NTN5Q8WTR8 489 aaPredicted RBP6.28□□□□□ -1.4
COL17A1-207ENST00000488320 SLC25A32Q9H2D1 315 aa6.28□□□□□ -1.4
COL17A1-207ENST00000488320 TMPRSS5Q9H3S3 457 aa6.28□□□□□ -1.4
COL17A1-207ENST00000488320 ANAPC10Q9UM13 185 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms