RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 ID1P41134 155 aa15.49■□□□□ 0.07
USP40-215ENST00000484528 PSMB3P49720 205 aa15.49■□□□□ 0.07
USP40-215ENST00000484528 EMP1P54849 157 aa15.49■□□□□ 0.07
USP40-215ENST00000484528 OR8I2Q8N0Y5 310 aa15.49■□□□□ 0.07
USP40-215ENST00000484528 THAP8Q8NA92 274 aa15.49■□□□□ 0.07
USP40-215ENST00000484528 DNAH6Q9C0G6 4158 aa15.49■□□□□ 0.07
USP40-215ENST00000484528 H3BP45 60 aa15.48■□□□□ 0.07
USP40-215ENST00000484528 SYNGR2O43760 224 aa15.48■□□□□ 0.07
USP40-215ENST00000484528 MED6O75586 246 aa15.48■□□□□ 0.07
USP40-215ENST00000484528 SLC25A6P12236 298 aa15.48■□□□□ 0.07
USP40-215ENST00000484528 S100A5P33763 92 aa15.48■□□□□ 0.07
USP40-215ENST00000484528 C1orf194Q5T5A4 169 aa15.48■□□□□ 0.07
USP40-215ENST00000484528 FOXI2Q6ZQN5 318 aa15.48■□□□□ 0.07
USP40-215ENST00000484528 SLC25A21Q9BQT8 299 aaPredicted RBP15.48■□□□□ 0.07
USP40-215ENST00000484528 TMED3Q9Y3Q3 217 aa15.48■□□□□ 0.07
USP40-215ENST00000484528 PRSS46E5RG02 174 aa15.47■□□□□ 0.07
USP40-215ENST00000484528 GATA2P23769 480 aaPredicted RBP15.47■□□□□ 0.07
USP40-215ENST00000484528 GGNBP1Q5YKI7 109 aa15.47■□□□□ 0.07
USP40-215ENST00000484528 ZNF705AQ6ZN79 300 aaPredicted RBP15.47■□□□□ 0.07
USP40-215ENST00000484528 CIB3Q96Q77 187 aaPredicted RBP15.47■□□□□ 0.07
USP40-215ENST00000484528 RNF126Q9BV68 326 aa15.47■□□□□ 0.07
USP40-215ENST00000484528 SLC35B3Q9H1N7 401 aa15.47■□□□□ 0.07
USP40-215ENST00000484528 SLC25A22Q9H936 323 aa15.47■□□□□ 0.07
USP40-215ENST00000484528 SPANXN5Q5MJ07 72 aa15.46■□□□□ 0.07
USP40-215ENST00000484528 CCDC190Q86UF4 302 aa15.46■□□□□ 0.07
USP40-215ENST00000484528 ZNF709Q8N972 641 aa15.46■□□□□ 0.07
USP40-215ENST00000484528 SLC25A32Q9H2D1 315 aa15.46■□□□□ 0.07
USP40-215ENST00000484528 ZNF705FA8MVS1 300 aaPredicted RBP15.45■□□□□ 0.06
USP40-215ENST00000484528 AMBPP02760 352 aa15.45■□□□□ 0.06
USP40-215ENST00000484528 ZNF705DP0CH99 300 aaPredicted RBP15.45■□□□□ 0.06
USP40-215ENST00000484528 ZNF705BP0CI00 300 aaPredicted RBP15.45■□□□□ 0.06
USP40-215ENST00000484528 AKR1C1Q04828 323 aa15.45■□□□□ 0.06
USP40-215ENST00000484528 TMEM182Q6ZP80 229 aaPredicted RBP15.45■□□□□ 0.06
USP40-215ENST00000484528 C20orf173Q96LM9 149 aa15.45■□□□□ 0.06
USP40-215ENST00000484528 ISLRO14498 428 aa15.44■□□□□ 0.06
USP40-215ENST00000484528 ADAP1O75689 374 aa15.44■□□□□ 0.06
USP40-215ENST00000484528 ORM2P19652 201 aa15.44■□□□□ 0.06
USP40-215ENST00000484528 RPP30P78346 268 aaKnown RBP15.44■□□□□ 0.06
USP40-215ENST00000484528 FAM78BQ5VT40 261 aa15.44■□□□□ 0.06
USP40-215ENST00000484528 ACOT7LQ6ZUV0 252 aa15.44■□□□□ 0.06
USP40-215ENST00000484528 C16orf92Q96LL3 132 aa15.44■□□□□ 0.06
USP40-215ENST00000484528 NEU1Q99519 415 aa15.44■□□□□ 0.06
USP40-215ENST00000484528 EBLN2Q6P2I7 272 aa15.43■□□□□ 0.06
USP40-215ENST00000484528 DEDD2Q8WXF8 326 aa15.43■□□□□ 0.06
USP40-215ENST00000484528 RSG1Q9BU20 258 aa15.43■□□□□ 0.06
USP40-215ENST00000484528 A0A0J9YX75 114 aa15.42■□□□□ 0.06
USP40-215ENST00000484528 ZNF98A6NK75 572 aa15.42■□□□□ 0.06
USP40-215ENST00000484528 GALR1P47211 349 aa15.42■□□□□ 0.06
USP40-215ENST00000484528 PAX9P55771 341 aa15.42■□□□□ 0.06
USP40-215ENST00000484528 PSG9Q00887 426 aa15.42■□□□□ 0.06
USP40-215ENST00000484528 BPIFCQ8NFQ6 507 aa15.42■□□□□ 0.06
USP40-215ENST00000484528 C17orf77Q96MU5 243 aa15.42■□□□□ 0.06
USP40-215ENST00000484528 SRRQ9GZT4 340 aa15.42■□□□□ 0.06
USP40-215ENST00000484528 RBM38Q9H0Z9 239 aaKnown RBP15.42■□□□□ 0.06
USP40-215ENST00000484528 DOK5Q9P104 306 aa15.42■□□□□ 0.06
USP40-215ENST00000484528 STRAPQ9Y3F4 350 aaKnown RBP15.42■□□□□ 0.06
USP40-215ENST00000484528 RFNGQ9Y644 331 aa15.42■□□□□ 0.06
USP40-215ENST00000484528 C9orf170A2RU37 121 aa15.41■□□□□ 0.06
USP40-215ENST00000484528 SMCO3A2RU48 225 aa15.41■□□□□ 0.06
USP40-215ENST00000484528 CFDP00746 253 aaPredicted RBP15.41■□□□□ 0.06
USP40-215ENST00000484528 SPART-AS1P0CW21 52 aa15.41■□□□□ 0.06
USP40-215ENST00000484528 MEOX2P50222 304 aa15.41■□□□□ 0.06
USP40-215ENST00000484528 POLR2GP62487 172 aaKnown RBP eCLIP15.41■□□□□ 0.06
USP40-215ENST00000484528 SPANXN2Q5MJ10 180 aa15.41■□□□□ 0.06
USP40-215ENST00000484528 OR1B1Q8NGR6 318 aa15.41■□□□□ 0.06
USP40-215ENST00000484528 CLUHP3Q96NS8 147 aa15.41■□□□□ 0.06
USP40-215ENST00000484528 C7orf50Q9BRJ6 194 aaKnown RBP15.41■□□□□ 0.06
USP40-215ENST00000484528 NDUFAF3Q9BU61 184 aa15.41■□□□□ 0.06
USP40-215ENST00000484528 RPRMQ9NS64 109 aa15.41■□□□□ 0.06
USP40-215ENST00000484528 PLA2G2EQ9NZK7 142 aa15.41■□□□□ 0.06
USP40-215ENST00000484528 FLVCR2Q9UPI3 526 aa15.41■□□□□ 0.06
USP40-215ENST00000484528 HECTD4Q9Y4D8 3996 aa15.4■□□□□ 0.06
USP40-215ENST00000484528 LINC00854A0A1B0GVQ3 168 aa15.4■□□□□ 0.06
USP40-215ENST00000484528 TMEM189A5PLL7 270 aa15.4■□□□□ 0.06
USP40-215ENST00000484528 SMIM9A6NGZ8 99 aa15.4■□□□□ 0.06
USP40-215ENST00000484528 SPATA31B1PQ5VZV4 182 aa15.4■□□□□ 0.06
USP40-215ENST00000484528 IGFL4Q6B9Z1 124 aa15.4■□□□□ 0.06
USP40-215ENST00000484528 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.4■□□□□ 0.06
USP40-215ENST00000484528 C1orf158Q8N1D5 194 aa15.4■□□□□ 0.06
USP40-215ENST00000484528 TMEM147Q9BVK8 224 aa15.4■□□□□ 0.06
USP40-215ENST00000484528 SLC45A2Q9UMX9 530 aa15.4■□□□□ 0.06
USP40-215ENST00000484528 GOLT1BQ9Y3E0 138 aa15.4■□□□□ 0.06
USP40-215ENST00000484528 INPP1P49441 399 aa15.39■□□□□ 0.05
USP40-215ENST00000484528 UBE2MP61081 183 aaKnown RBP15.39■□□□□ 0.05
USP40-215ENST00000484528 BAK1Q16611 211 aa15.39■□□□□ 0.05
USP40-215ENST00000484528 FAM222AQ5U5X8 452 aa15.39■□□□□ 0.05
USP40-215ENST00000484528 SAMD13Q5VXD3 122 aa15.39■□□□□ 0.05
USP40-215ENST00000484528 LOC102723971A0A1B0GUV8 181 aa15.38■□□□□ 0.05
USP40-215ENST00000484528 SSSCA1O60232 199 aa15.38■□□□□ 0.05
USP40-215ENST00000484528 CCNKO75909 580 aa15.38■□□□□ 0.05
USP40-215ENST00000484528 NDUFB6O95139 128 aa15.38■□□□□ 0.05
USP40-215ENST00000484528 ID3Q02535 119 aa15.38■□□□□ 0.05
USP40-215ENST00000484528 FGL1Q08830 312 aa15.38■□□□□ 0.05
USP40-215ENST00000484528 TRIQKQ629K1 86 aa15.38■□□□□ 0.05
USP40-215ENST00000484528 PSENENQ9NZ42 101 aa15.38■□□□□ 0.05
USP40-215ENST00000484528 DKK2Q9UBU2 259 aa15.38■□□□□ 0.05
USP40-215ENST00000484528 HBE1P02100 147 aa15.37■□□□□ 0.05
USP40-215ENST00000484528 P0DMU3 169 aa15.37■□□□□ 0.05
USP40-215ENST00000484528 FAM231AP0DMU4 169 aa15.37■□□□□ 0.05
USP40-215ENST00000484528 FAM231CP0DMU5 169 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms