RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 NBEAP1P0C6P0 100 aa10.7□□□□□ -0.7
USP40-214ENST00000483519 FAM222BQ8WU58 562 aa10.7□□□□□ -0.7
USP40-214ENST00000483519 CITED2Q99967 270 aaPredicted RBP10.7□□□□□ -0.7
USP40-214ENST00000483519 MED13Q9UHV7 2174 aa10.69□□□□□ -0.7
USP40-214ENST00000483519 HAX1O00165 279 aa10.69□□□□□ -0.7
USP40-214ENST00000483519 IGLC1P0CG04 106 aa10.69□□□□□ -0.7
USP40-214ENST00000483519 SPRNQ5BIV9 151 aa10.69□□□□□ -0.7
USP40-214ENST00000483519 ZNF833PQ6ZTB9 187 aa10.69□□□□□ -0.7
USP40-214ENST00000483519 OR4A5Q8NH83 315 aa10.69□□□□□ -0.7
USP40-214ENST00000483519 VSTM2AQ8TAG5 236 aa10.69□□□□□ -0.7
USP40-214ENST00000483519 ITLN1Q8WWA0 313 aa10.69□□□□□ -0.7
USP40-214ENST00000483519 SPRY3O43610 288 aa10.69□□□□□ -0.7
USP40-214ENST00000483519 ORM2P19652 201 aa10.69□□□□□ -0.7
USP40-214ENST00000483519 HTR1DP28221 377 aa10.69□□□□□ -0.7
USP40-214ENST00000483519 FAM201AQ5SY85 155 aa10.69□□□□□ -0.7
USP40-214ENST00000483519 GTF2H5Q6ZYL4 71 aa10.69□□□□□ -0.7
USP40-214ENST00000483519 GAGE10A6NGK3 116 aa10.68□□□□□ -0.7
USP40-214ENST00000483519 WT1-ASQ06250 92 aa10.68□□□□□ -0.7
USP40-214ENST00000483519 MSMPQ1L6U9 139 aa10.68□□□□□ -0.7
USP40-214ENST00000483519 Q5PR19 223 aa10.68□□□□□ -0.7
USP40-214ENST00000483519 DUX4L9Q6RFH8 374 aaPredicted RBP10.68□□□□□ -0.7
USP40-214ENST00000483519 ZCCHC24Q8N2G6 241 aaKnown RBP10.68□□□□□ -0.7
USP40-214ENST00000483519 OR1B1Q8NGR6 318 aa10.68□□□□□ -0.7
USP40-214ENST00000483519 AP1S3Q96PC3 154 aa10.68□□□□□ -0.7
USP40-214ENST00000483519 MRPL20Q9BYC9 149 aaKnown RBP10.68□□□□□ -0.7
USP40-214ENST00000483519 NCOR2Q9Y618 2525 aa10.68□□□□□ -0.7
USP40-214ENST00000483519 NPIPB6E9PJ23 425 aa10.68□□□□□ -0.7
USP40-214ENST00000483519 TCRAP04437 139 aa10.68□□□□□ -0.7
USP40-214ENST00000483519 COL8A1P27658 744 aa10.68□□□□□ -0.7
USP40-214ENST00000483519 C2orf91Q6ZV80 131 aa10.68□□□□□ -0.7
USP40-214ENST00000483519 TMEM167AQ8TBQ9 72 aa10.68□□□□□ -0.7
USP40-214ENST00000483519 FLYWCH2Q96CP2 140 aaKnown RBP10.68□□□□□ -0.7
USP40-214ENST00000483519 MCRIP2Q9BUT9 160 aaKnown RBP10.68□□□□□ -0.7
USP40-214ENST00000483519 AP5S1Q9NUS5 200 aa10.68□□□□□ -0.7
USP40-214ENST00000483519 RNF7Q9UBF6 113 aa10.68□□□□□ -0.7
USP40-214ENST00000483519 IGHV3-48P01763 117 aa10.67□□□□□ -0.7
USP40-214ENST00000483519 IGHG3P01860 377 aa10.67□□□□□ -0.7
USP40-214ENST00000483519 CSN1S1P47710 185 aa10.67□□□□□ -0.7
USP40-214ENST00000483519 ZNF138P52744 262 aa10.67□□□□□ -0.7
USP40-214ENST00000483519 UCNP55089 124 aa10.67□□□□□ -0.7
USP40-214ENST00000483519 TMEM97Q5BJF2 176 aa10.67□□□□□ -0.7
USP40-214ENST00000483519 C9orf106Q8NAJ2 232 aa10.67□□□□□ -0.7
USP40-214ENST00000483519 GAFA1Q96PS6 74 aa10.67□□□□□ -0.7
USP40-214ENST00000483519 ZNRD1Q9P1U0 126 aa10.67□□□□□ -0.7
USP40-214ENST00000483519 hADV38S2A0JD32 116 aa10.67□□□□□ -0.7
USP40-214ENST00000483519 E7EUB6 86 aa10.67□□□□□ -0.7
USP40-214ENST00000483519 GATA4P43694 442 aa10.67□□□□□ -0.7
USP40-214ENST00000483519 BHLHA15Q7RTS1 189 aaPredicted RBP10.67□□□□□ -0.7
USP40-214ENST00000483519 MEGF9Q9H1U4 602 aa10.67□□□□□ -0.7
USP40-214ENST00000483519 TIMM8BQ9Y5J9 83 aaPredicted RBP10.67□□□□□ -0.7
USP40-214ENST00000483519 DSCAMO60469 2012 aa10.66□□□□□ -0.7
USP40-214ENST00000483519 A6NDN8 102 aa10.66□□□□□ -0.7
USP40-214ENST00000483519 KLK10O43240 276 aa10.66□□□□□ -0.7
USP40-214ENST00000483519 CSN3P07498 182 aa10.66□□□□□ -0.7
USP40-214ENST00000483519 OR5AN1Q8NGI8 311 aa10.66□□□□□ -0.7
USP40-214ENST00000483519 OR4C13Q8NGP0 309 aa10.66□□□□□ -0.7
USP40-214ENST00000483519 OR10X1Q8NGY0 326 aa10.66□□□□□ -0.7
USP40-214ENST00000483519 NEU4Q8WWR8 484 aaPredicted RBP10.66□□□□□ -0.7
USP40-214ENST00000483519 DPF1Q92782 380 aa10.66□□□□□ -0.7
USP40-214ENST00000483519 Q9H3A6 140 aa10.66□□□□□ -0.7
USP40-214ENST00000483519 OR10AG1Q8NH19 301 aa10.66□□□□□ -0.7
USP40-214ENST00000483519 CCL13Q99616 98 aa10.66□□□□□ -0.7
USP40-214ENST00000483519 PPIAL4DF5H284 164 aa10.65□□□□□ -0.7
USP40-214ENST00000483519 APOHP02749 345 aaPredicted RBP10.65□□□□□ -0.7
USP40-214ENST00000483519 GP9P14770 177 aa10.65□□□□□ -0.7
USP40-214ENST00000483519 FA2HQ7L5A8 372 aa10.65□□□□□ -0.7
USP40-214ENST00000483519 Q86TA4 180 aa10.65□□□□□ -0.7
USP40-214ENST00000483519 DEFB108BQ8NET1 73 aa10.65□□□□□ -0.7
USP40-214ENST00000483519 TRGV9Q99603 122 aa10.65□□□□□ -0.7
USP40-214ENST00000483519 ZNF747Q9BV97 191 aa10.65□□□□□ -0.7
USP40-214ENST00000483519 HEATR1Q9H583 2144 aaKnown RBP10.65□□□□□ -0.7
USP40-214ENST00000483519 ZNF71Q9NQZ8 489 aaPredicted RBP10.65□□□□□ -0.7
USP40-214ENST00000483519 MRPL36Q9P0J6 103 aaKnown RBP10.65□□□□□ -0.7
USP40-214ENST00000483519 SLC25A15Q9Y619 301 aa10.65□□□□□ -0.7
USP40-214ENST00000483519 LINC00312Q9Y6C7 94 aa10.65□□□□□ -0.7
USP40-214ENST00000483519 A0A1B0GUT8 65 aa10.65□□□□□ -0.7
USP40-214ENST00000483519 CGB1A6NKQ9 187 aa10.65□□□□□ -0.7
USP40-214ENST00000483519 FAM216BQ8N7L0 139 aa10.65□□□□□ -0.7
USP40-214ENST00000483519 PROCRQ9UNN8 238 aa10.65□□□□□ -0.7
USP40-214ENST00000483519 ACACAQ13085 2346 aa10.65□□□□□ -0.71
USP40-214ENST00000483519 PRR14LQ5THK1 2151 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 H3BRM9 83 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 TNFRSF6BO95407 300 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 FAM87AP0C7U9 286 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 GLRXP35754 106 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 RIGQ13278 110 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 C10orf55Q5SWW7 151 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 UFSP1Q6NVU6 142 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 ZNF788Q6ZQV5 615 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 FER1L6-AS1Q8NA97 138 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 C9orf118A6NHY6 69 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 VHLLQ6RSH7 139 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 RAXQ9Y2V3 346 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 URB1O60287 2271 aaKnown RBP10.64□□□□□ -0.71
USP40-214ENST00000483519 A0A1B0GW15 77 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 OR1N2Q8NGR9 330 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 PRSS3P2Q8NHM4 247 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 OTORQ9NRC9 128 aa10.64□□□□□ -0.71
USP40-214ENST00000483519 APC2O95996 2303 aa10.63□□□□□ -0.71
USP40-214ENST00000483519 RAI1Q7Z5J4 1906 aaPredicted RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms