RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 IGKV1-13P0DP09 117 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 FCGR1AP12314 374 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 CD36P16671 472 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 GABRB1P18505 474 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 DCKP27707 260 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 FGF8P55075 233 aaPredicted RBP3.11□□□□□ -1.91
USP4-209ENST00000475873 PAX9P55771 341 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 TAS2R43P59537 309 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 RBX1P62877 108 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 IFITM2Q01629 132 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 ACSM3Q53FZ2 586 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 FAM78BQ5VT40 261 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 TRIQKQ629K1 86 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 CROCCP2Q86T23 111 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 ZNF546Q86UE3 836 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 H1FOOQ8IZA3 346 aaPredicted RBP3.11□□□□□ -1.91
USP4-209ENST00000475873 SYS1Q8N2H4 156 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 ACBD7Q8N6N7 88 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 OR4B1Q8NGF8 309 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 OR4A4PQ8NGN8 299 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 SMIM12Q96EX1 92 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 IGF2BP2-AS1Q96M15 143 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 SRRQ9GZT4 340 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 NOP10Q9NPE3 64 aaKnown RBP3.11□□□□□ -1.91
USP4-209ENST00000475873 NDUFA4L2Q9NRX3 87 aa3.11□□□□□ -1.91
USP4-209ENST00000475873 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.1□□□□□ -1.91
USP4-209ENST00000475873 TEX50A0A1B0GTY4 177 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 CCDC160A6NGH7 325 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 M0R2Z0 102 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 GOSR2O14653 212 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 LECT2O14960 151 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 MT-CO2P00403 227 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 LALBAP00709 142 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 RAP2AP10114 183 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 NPPCP23582 126 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 SERPINB10P48595 397 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 RORCP51449 518 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 TIRAPP58753 221 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 HERV-K104P63124 156 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 PSG9Q00887 426 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 DHODHQ02127 395 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 CD300CQ08708 224 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 FOXI2Q6ZQN5 318 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 FAM219AQ8IW50 185 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 BAP18Q8IXM2 172 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 CCDC71LQ8N9Z2 235 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 OR4S2Q8NH73 311 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 LGALS12Q96DT0 336 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 NARS2Q96I59 477 aaKnown RBP3.1□□□□□ -1.91
USP4-209ENST00000475873 PAXXQ9BUH6 204 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 TMEM59Q9BXS4 323 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 LPAR5Q9H1C0 372 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 TMPRSS5Q9H3S3 457 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 TMEM231Q9H6L2 316 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 HRASLSQ9HDD0 168 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 NIT2Q9NQR4 276 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 PLEKHJ1Q9NW61 149 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 ERVK13-1Q9NX77 482 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 LY96Q9Y6Y9 160 aa3.1□□□□□ -1.91
USP4-209ENST00000475873 A0A0J9YXV3 536 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 C9orf170A2RU37 121 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 TMEM14DPA8MWL7 114 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 PANO1I0J062 215 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 ZNF561-AS1K7EIQ3 104 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 SULT1C2O00338 296 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 MFNGO00587 321 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 SOCS3O14543 225 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 DLEU1O43261 78 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 PSCAO43653 123 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 GNG7O60262 68 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 IGKV1-17P01599 117 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 FCGR3AP08637 254 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 TRAPPC2P0DI81 140 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 TRAPPC2BP0DI82 140 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 CNN1P51911 297 aaKnown RBP3.09□□□□□ -1.91
USP4-209ENST00000475873 SNRPD3P62318 126 aaKnown RBP3.09□□□□□ -1.91
USP4-209ENST00000475873 FGL1Q08830 312 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 PSG3Q16557 428 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 POU2AF1Q16633 256 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 BSXQ3C1V8 233 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 KDM4DQ6B0I6 523 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 RNASEKQ6P5S7 137 aaKnown RBP3.09□□□□□ -1.91
USP4-209ENST00000475873 LYPD5Q6UWN5 251 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 LRTM2Q8N967 370 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 OCC1Q8TAD7 63 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 MARCH1Q8TCQ1 289 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 CANT1Q8WVQ1 401 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 TCTEX1D2Q8WW35 142 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 MISP3Q96FF7 219 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 ARHGAP5-AS1Q96IT6 56 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 C20orf173Q96LM9 149 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 METTL26Q96S19 204 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 PDCD10Q9BUL8 212 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 DCSTAMPQ9H295 470 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 NRN1Q9NPD7 142 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 CACNG5Q9UF02 275 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 RAB21Q9UL25 225 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 KCNIP3Q9Y2W7 256 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 NSG2Q9Y328 171 aa3.09□□□□□ -1.91
USP4-209ENST00000475873 RBM7Q9Y580 266 aaKnown RBP3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms