RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 TMEM254Q8TBM7 123 aa0.68□□□□□ -2.3
CCDC88A-212ENST00000474059 CEP19Q96LK0 163 aa0.68□□□□□ -2.3
CCDC88A-212ENST00000474059 YPEL2Q96QA6 119 aa0.68□□□□□ -2.3
CCDC88A-212ENST00000474059 CDC42SE1Q9NRR8 79 aa0.68□□□□□ -2.3
CCDC88A-212ENST00000474059 TMEM256-PLSCR3K7ERE1 68 aa0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 DHFRP00374 187 aa0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 NCALDP61601 193 aa0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 UBE2BP63146 152 aa0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 GDF5OSQ5U4N7 250 aa0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 HACD4Q5VWC8 232 aa0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 DHRS4L2Q6PKH6 230 aa0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 C4orf3Q8WVX3 66 aa0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 LINC00467Q9BRT7 94 aa0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 MED29Q9NX70 200 aa0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 CHCHD2Q9Y6H1 151 aaPredicted RBP0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 ARHGEF11O15085 1522 aa0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 POLEQ07864 2286 aa0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 NUP210LQ5VU65 1888 aa0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 PEAK1Q9H792 1746 aa0.67□□□□□ -2.3
CCDC88A-212ENST00000474059 E9PCH4 1651 aa0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 M0R378 163 aa0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 GGCTO75223 188 aaKnown RBP0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 BANF1O75531 89 aa0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 ZNF25P17030 456 aaPredicted RBP0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 ARF6P62330 175 aa0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 PRB3Q04118 309 aaPredicted RBP0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 MPV17LQ2QL34 196 aa0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 SPRNQ5BIV9 151 aa0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 OR2T35Q8NGX2 323 aa0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 OR10K1Q8NGX5 313 aa0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 PATE1Q8WXA2 126 aa0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 GPER1Q99527 375 aa0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 SLC25A21Q9BQT8 299 aaPredicted RBP0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 PYCARDQ9ULZ3 195 aa0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 NUP98P52948 1817 aa0.66□□□□□ -2.3
CCDC88A-212ENST00000474059 LAMB4A4D0S4 1761 aa0.65□□□□□ -2.3
CCDC88A-212ENST00000474059 TNS3Q68CZ2 1445 aa0.65□□□□□ -2.3
CCDC88A-212ENST00000474059 PLXNA4Q9HCM2 1894 aa0.65□□□□□ -2.3
CCDC88A-212ENST00000474059 TNRC6AQ8NDV7 1962 aaKnown RBP0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 TCRBV4S1A1TA0A5B7 111 aa0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 A8MWV9 139 aa0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 B4DSR2 109 aa0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 ATG12O94817 140 aa0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 DYNLT3P51808 116 aa0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 ROMO1P60602 79 aa0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 EXOC3-AS1Q8N2X6 119 aa0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 ST6GALNAC3Q8NDV1 305 aa0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 CANT1Q8WVQ1 401 aa0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 PSTPIP2Q9H939 334 aa0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 PCTPQ9UKL6 214 aa0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 PRNDQ9UKY0 176 aa0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 MYH10P35580 1976 aa0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 SCN8AQ9UQD0 1980 aa0.65□□□□□ -2.31
CCDC88A-212ENST00000474059 SCN3AQ9NY46 2000 aa0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 TRBV6-4A0A1B0GX49 114 aa0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 G3V2T6 193 aa0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 CCL25O15444 150 aa0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 CCL16O15467 120 aa0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 NDUFC2O95298 119 aa0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 DNAL4O96015 105 aa0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 GNG5P63218 68 aa0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 BASP1P80723 227 aaKnown RBP0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 MYL5Q02045 173 aa0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 FAM74A1Q5RGS3 127 aa0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 BORCS5Q969J3 196 aa0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 NPCDR1Q9BY65 106 aa0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 TAS2R7Q9NYW3 318 aa0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 CEP164Q9UPV0 1460 aa0.64□□□□□ -2.31
CCDC88A-212ENST00000474059 TECTAO75443 2155 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 ROS1P08922 2347 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 TLCD2A6NGC4 264 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 CD2P06729 351 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 CRHP06850 196 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 HLA-EP13747 358 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 NFYBP25208 207 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 C2orf82Q6UX34 121 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 PATE2Q6UY27 113 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 C4orf22Q6V702 233 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 ZNF833PQ6ZTB9 187 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 OR5D14Q8NGL3 314 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 CDC26Q8NHZ8 85 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 TEX37Q96LM6 180 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 LINC00052Q96N35 136 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 TP53RKQ96S44 253 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 SS18L2Q9UHA2 77 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 STOML2Q9UJZ1 356 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 LY96Q9Y6Y9 160 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 LAMA4Q16363 1823 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 KDM6AO15550 1401 aaPredicted RBP0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 KIAA1549Q9HCM3 1950 aa0.63□□□□□ -2.31
CCDC88A-212ENST00000474059 N4BP2Q86UW6 1770 aaPredicted RBP0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 ALPK3Q96L96 1907 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 EIF3AQ14152 1382 aaKnown RBP0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 TRAV10A0A0B4J240 114 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 DUXBA0A1W2PPF3 345 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 H7C1C5 153 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 AIPO00170 330 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 PHBP35232 272 aa0.62□□□□□ -2.31
CCDC88A-212ENST00000474059 INSL3P51460 131 aa0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms