RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 LINC00299Q6ZSB3 139 aa13.07□□□□□ -0.32
UPF3A-203ENST00000474056 TMEM144Q7Z5S9 345 aa13.07□□□□□ -0.32
UPF3A-203ENST00000474056 TMEM217Q8N7C4 229 aa13.07□□□□□ -0.32
UPF3A-203ENST00000474056 BPIFCQ8NFQ6 507 aa13.07□□□□□ -0.32
UPF3A-203ENST00000474056 C11orf68Q9H3H3 251 aaKnown RBP13.07□□□□□ -0.32
UPF3A-203ENST00000474056 FBXL17Q9UF56 701 aa13.07□□□□□ -0.32
UPF3A-203ENST00000474056 SOCS3O14543 225 aa13.06□□□□□ -0.32
UPF3A-203ENST00000474056 DEFB4AO15263 64 aa13.06□□□□□ -0.32
UPF3A-203ENST00000474056 JTBO76095 146 aa13.06□□□□□ -0.32
UPF3A-203ENST00000474056 CFDP00746 253 aaPredicted RBP13.06□□□□□ -0.32
UPF3A-203ENST00000474056 METTL15P1P0C7V9 234 aa13.06□□□□□ -0.32
UPF3A-203ENST00000474056 RRAS2P62070 204 aaPredicted RBP13.06□□□□□ -0.32
UPF3A-203ENST00000474056 CLEC5AQ9NY25 188 aa13.06□□□□□ -0.32
UPF3A-203ENST00000474056 TBC1D24Q9ULP9 559 aa13.06□□□□□ -0.32
UPF3A-203ENST00000474056 NUPR2A6NF83 97 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 A6NHS1 94 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 MBPP02686 304 aaPredicted RBP13.05□□□□□ -0.32
UPF3A-203ENST00000474056 ORM2P19652 201 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 DEFB1P60022 68 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 TMEM41BQ5BJD5 291 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 OR8I2Q8N0Y5 310 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 ZNF431Q8TF32 576 aaPredicted RBP13.05□□□□□ -0.32
UPF3A-203ENST00000474056 S100ZQ8WXG8 99 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 SLC25A22Q9H936 323 aa13.05□□□□□ -0.32
UPF3A-203ENST00000474056 ZNF98A6NK75 572 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 H3BMM0 161 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 TSC22D2O75157 780 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 H2AFB2P0C5Z0 115 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 TAS2R30P59541 319 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 DLK1P80370 383 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 GDF5OSQ5U4N7 250 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 CYP2G1PQ6ZSU1 146 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 Q8NAQ8 132 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 OR1B1Q8NGR6 318 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 SLC25A32Q9H2D1 315 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 SLC45A2Q9UMX9 530 aa13.04□□□□□ -0.32
UPF3A-203ENST00000474056 FAM240BA0A1B0GVZ2 78 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 C7orf66A4D0T2 115 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 FAM25EA8MYX2 175 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 HLA-DRB4P13762 266 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 ID1P41134 155 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 PSMB3P49720 205 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 CEMP1Q6PRD7 247 aaPredicted RBP13.03□□□□□ -0.32
UPF3A-203ENST00000474056 C12orf45Q8N5I9 185 aaPredicted RBP13.03□□□□□ -0.32
UPF3A-203ENST00000474056 CSNK1G2-AS1Q8NCQ2 148 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 OR10P1Q8NGE3 313 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 C17orf77Q96MU5 243 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 LINC00052Q96N35 136 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 DOK5Q9P104 306 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 LSM5Q9Y4Y9 91 aaKnown RBP13.03□□□□□ -0.32
UPF3A-203ENST00000474056 HLA-DRB4X5D2U9 266 aa13.03□□□□□ -0.32
UPF3A-203ENST00000474056 ZNF705EA8MWA4 302 aaPredicted RBP13.02□□□□□ -0.33
UPF3A-203ENST00000474056 IL5P05113 134 aa13.02□□□□□ -0.33
UPF3A-203ENST00000474056 NANOS2P60321 138 aaKnown RBP13.02□□□□□ -0.33
UPF3A-203ENST00000474056 ARL16Q0P5N6 197 aa13.02□□□□□ -0.33
UPF3A-203ENST00000474056 ZNF846Q147U1 533 aa13.02□□□□□ -0.33
UPF3A-203ENST00000474056 TMEM147Q9BVK8 224 aa13.02□□□□□ -0.33
UPF3A-203ENST00000474056 X6R8D5 127 aa13.02□□□□□ -0.33
UPF3A-203ENST00000474056 IGHV4-28A0A0C4DH34 117 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 C5orf51A6NDU8 294 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 H3BRN7 92 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 K7EPK0 472 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 GALR1P47211 349 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 ASAH1Q13510 395 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 MZT2BQ6NZ67 158 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 C11orf45Q8TAV5 145 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 PHLDA1Q8WV24 401 aaPredicted RBP13.01□□□□□ -0.33
UPF3A-203ENST00000474056 SCRT1Q9BWW7 348 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 SAV1Q9H4B6 383 aaPredicted RBP13.01□□□□□ -0.33
UPF3A-203ENST00000474056 NPVFQ9HCQ7 196 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 MGAT4CQ9UBM8 478 aa13.01□□□□□ -0.33
UPF3A-203ENST00000474056 FNDC10F2Z333 226 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 ISLRO14498 428 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 LINC00869P0C866 280 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 RBMY1A1P0DJD3 496 aaKnown RBP13□□□□□ -0.33
UPF3A-203ENST00000474056 RBMY1CP0DJD4 496 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 NUTF2P61970 127 aaKnown RBP13□□□□□ -0.33
UPF3A-203ENST00000474056 RBMY1FQ15415 496 aaKnown RBP13□□□□□ -0.33
UPF3A-203ENST00000474056 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 FOXI2Q6ZQN5 318 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 C20orf173Q96LM9 149 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 RSG1Q9BU20 258 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 SLC25A39Q9BZJ4 359 aaPredicted RBP13□□□□□ -0.33
UPF3A-203ENST00000474056 XCL2Q9UBD3 114 aa13□□□□□ -0.33
UPF3A-203ENST00000474056 EPPK1P58107 5090 aaKnown RBP12.99□□□□□ -0.33
UPF3A-203ENST00000474056 L7N2F9 121 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 IGKV3-20P01619 116 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 MIFP14174 115 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 MEOX2P50222 304 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 PLP1P60201 277 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 SELENOTP62341 195 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 VAMP2P63027 116 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 SLC38A11Q08AI6 406 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 TEPPQ6URK8 271 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 LINC00476Q8WZB0 136 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 C16orf92Q96LL3 132 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 C2orf50Q96LR7 162 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 SHANK2-AS3Q9BTD1 123 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 C11orf1Q9H5F2 150 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 PTTG2Q9NZH5 202 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms