RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 UQCC1Q9NVA1 299 aa11.38□□□□□ -0.59
SDC3-203ENST00000471567 OR5AC2Q9NZP5 309 aa11.38□□□□□ -0.59
SDC3-203ENST00000471567 FBXL17Q9UF56 701 aa11.38□□□□□ -0.59
SDC3-203ENST00000471567 UBQLN2Q9UHD9 624 aa11.38□□□□□ -0.59
SDC3-203ENST00000471567 RBMY1BA6NDE4 496 aaKnown RBP11.37□□□□□ -0.59
SDC3-203ENST00000471567 RBMY1EA6NEQ0 496 aaKnown RBP11.37□□□□□ -0.59
SDC3-203ENST00000471567 K7EQG2 157 aa11.37□□□□□ -0.59
SDC3-203ENST00000471567 MPC2O95563 127 aa11.37□□□□□ -0.59
SDC3-203ENST00000471567 RBMY1DP0C7P1 496 aaKnown RBP11.37□□□□□ -0.59
SDC3-203ENST00000471567 RAB31Q13636 194 aa11.37□□□□□ -0.59
SDC3-203ENST00000471567 HAGHQ16775 308 aa11.37□□□□□ -0.59
SDC3-203ENST00000471567 SIGLEC15Q6ZMC9 328 aa11.37□□□□□ -0.59
SDC3-203ENST00000471567 ZNF546Q86UE3 836 aa11.37□□□□□ -0.59
SDC3-203ENST00000471567 WFDC3Q8IUB2 231 aa11.37□□□□□ -0.59
SDC3-203ENST00000471567 STPG3Q8N7X2 389 aa11.37□□□□□ -0.59
SDC3-203ENST00000471567 STXBP6Q8NFX7 210 aa11.37□□□□□ -0.59
SDC3-203ENST00000471567 PPP1R14BQ96C90 147 aa11.37□□□□□ -0.59
SDC3-203ENST00000471567 RNF126Q9BV68 326 aa11.37□□□□□ -0.59
SDC3-203ENST00000471567 TMEM147Q9BVK8 224 aa11.37□□□□□ -0.59
SDC3-203ENST00000471567 AGPAT2O15120 278 aa11.36□□□□□ -0.59
SDC3-203ENST00000471567 LINC00869P0C866 280 aa11.36□□□□□ -0.59
SDC3-203ENST00000471567 ORM2P19652 201 aa11.36□□□□□ -0.59
SDC3-203ENST00000471567 CXCL3P19876 107 aa11.36□□□□□ -0.59
SDC3-203ENST00000471567 BAXQ07812 192 aa11.36□□□□□ -0.59
SDC3-203ENST00000471567 PXDC1Q5TGL8 231 aa11.36□□□□□ -0.59
SDC3-203ENST00000471567 S100A7AQ86SG5 101 aa11.36□□□□□ -0.59
SDC3-203ENST00000471567 OR1B1Q8NGR6 318 aa11.36□□□□□ -0.59
SDC3-203ENST00000471567 DCANP1Q8TF63 244 aa11.36□□□□□ -0.59
SDC3-203ENST00000471567 CITED4Q96RK1 184 aa11.36□□□□□ -0.59
SDC3-203ENST00000471567 TM2D3Q9BRN9 247 aa11.36□□□□□ -0.59
SDC3-203ENST00000471567 MAP6D1Q9H9H5 199 aa11.36□□□□□ -0.59
SDC3-203ENST00000471567 SEPSECSQ9HD40 501 aaKnown RBP11.36□□□□□ -0.59
SDC3-203ENST00000471567 WDR83OSQ9Y284 106 aa11.36□□□□□ -0.59
SDC3-203ENST00000471567 LOC102724200A0A096LPH7 203 aaPredicted RBP11.35□□□□□ -0.59
SDC3-203ENST00000471567 HYPMO75409 117 aa11.35□□□□□ -0.59
SDC3-203ENST00000471567 RAP2BP61225 183 aa11.35□□□□□ -0.59
SDC3-203ENST00000471567 EWSR1Q01844 656 aaKnown RBP eCLIP11.35□□□□□ -0.593e-8■■■■■ 30.8
SDC3-203ENST00000471567 FCN2Q15485 313 aa11.35□□□□□ -0.59
SDC3-203ENST00000471567 ASB13Q8WXK3 278 aa11.35□□□□□ -0.59
SDC3-203ENST00000471567 MGST2Q99735 147 aa11.35□□□□□ -0.59
SDC3-203ENST00000471567 ZMAT4Q9H898 229 aa11.35□□□□□ -0.59
SDC3-203ENST00000471567 NRN1Q9NPD7 142 aa11.35□□□□□ -0.59
SDC3-203ENST00000471567 U3KQK5 164 aa11.35□□□□□ -0.59
SDC3-203ENST00000471567 ZNF98A6NK75 572 aa11.34□□□□□ -0.59
SDC3-203ENST00000471567 CAMLGP49069 296 aa11.34□□□□□ -0.59
SDC3-203ENST00000471567 NHLH2Q02577 135 aa11.34□□□□□ -0.59
SDC3-203ENST00000471567 OR8I2Q8N0Y5 310 aa11.34□□□□□ -0.59
SDC3-203ENST00000471567 OR11H7Q8NGC8 314 aa11.34□□□□□ -0.59
SDC3-203ENST00000471567 CHAC2Q8WUX2 184 aa11.34□□□□□ -0.59
SDC3-203ENST00000471567 GPR82Q96P67 336 aa11.34□□□□□ -0.59
SDC3-203ENST00000471567 GGTLC1Q9BX51 225 aa11.34□□□□□ -0.59
SDC3-203ENST00000471567 RNF24Q9Y225 148 aa11.34□□□□□ -0.59
SDC3-203ENST00000471567 HIGD1AQ9Y241 93 aa11.34□□□□□ -0.59
SDC3-203ENST00000471567 DNAH9Q9NYC9 4486 aa11.34□□□□□ -0.59
SDC3-203ENST00000471567 MPDU1O75352 247 aa11.33□□□□□ -0.6
SDC3-203ENST00000471567 OR5G3P0C626 314 aa11.33□□□□□ -0.6
SDC3-203ENST00000471567 LYL1P12980 280 aa11.33□□□□□ -0.6
SDC3-203ENST00000471567 DEFB131AP59861 70 aa11.33□□□□□ -0.6
SDC3-203ENST00000471567 APRG1Q8IVJ8 170 aa11.33□□□□□ -0.6
SDC3-203ENST00000471567 FAM24BQ8N5W8 94 aa11.33□□□□□ -0.6
SDC3-203ENST00000471567 OR5C1Q8NGR4 320 aa11.33□□□□□ -0.6
SDC3-203ENST00000471567 SPATA25Q9BR10 227 aa11.33□□□□□ -0.6
SDC3-203ENST00000471567 SHANK2-AS3Q9BTD1 123 aa11.33□□□□□ -0.6
SDC3-203ENST00000471567 SLC25A39Q9BZJ4 359 aaPredicted RBP11.33□□□□□ -0.6
SDC3-203ENST00000471567 ARL6Q9H0F7 186 aa11.33□□□□□ -0.6
SDC3-203ENST00000471567 DOK5Q9P104 306 aa11.33□□□□□ -0.6
SDC3-203ENST00000471567 UBE2L5PA0A1B0GUS4 154 aa11.32□□□□□ -0.6
SDC3-203ENST00000471567 H3BRN7 92 aa11.32□□□□□ -0.6
SDC3-203ENST00000471567 GALR1P47211 349 aa11.32□□□□□ -0.6
SDC3-203ENST00000471567 RPL29P47914 159 aaKnown RBP11.32□□□□□ -0.6
SDC3-203ENST00000471567 THAP6Q8TBB0 222 aa11.32□□□□□ -0.6
SDC3-203ENST00000471567 MBD2Q9UBB5 411 aa11.32□□□□□ -0.6
SDC3-203ENST00000471567 COL7A1Q02388 2944 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 ELOA3CA0A087WX78 387 aaPredicted RBP11.31□□□□□ -0.6
SDC3-203ENST00000471567 KIR2DL5BA0A0G2JN68 375 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 KIR2DL5BA0A0G2JPC4 375 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 GIPP09681 153 aaPredicted RBP11.31□□□□□ -0.6
SDC3-203ENST00000471567 ZNF688P0C7X2 276 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 RPL12P30050 165 aaKnown RBP11.31□□□□□ -0.6
SDC3-203ENST00000471567 APOC4P55056 127 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 SNRPD3P62318 126 aaKnown RBP11.31□□□□□ -0.6
SDC3-203ENST00000471567 PRR20EP86478 221 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 PRR20CP86479 221 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 PRR20DP86480 221 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 PRR20BP86481 221 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 PRR20AP86496 221 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 FGL1Q08830 312 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 OPCMLQ14982 345 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 SAMD13Q5VXD3 122 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 PATE2Q6UY27 113 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 Q6ZRG5 221 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 KIR2DL5AQ8N109 375 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 KIR2DL5BQ8NHK3 375 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 RCHY1Q96PM5 261 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 ARV1Q9H2C2 271 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 SLC25A32Q9H2D1 315 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 SLC25A22Q9H936 323 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 HSPB11Q9Y547 144 aa11.31□□□□□ -0.6
SDC3-203ENST00000471567 UBE2CO00762 179 aa11.3□□□□□ -0.6
SDC3-203ENST00000471567 RPL7P18124 248 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms