RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ARPC4P59998 168 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 CXCR4P61073 352 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 MRPS25P82663 173 aaKnown RBP2.86□□□□□ -1.95
HMGB1-207ENST00000468384 TSPAN31Q12999 210 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 ZNF726P1Q15940 193 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 OR2B11Q5JQS5 317 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 NXNL2Q5VZ03 156 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 DHRS4L2Q6PKH6 230 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 Q6ZN92 141 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 AKAP14Q86UN6 197 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 CBLN2Q8IUK8 224 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 ZFP82Q8N141 532 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 ZFP41Q8N8Y5 198 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 DGCR14Q96DF8 476 aaKnown RBP2.86□□□□□ -1.95
HMGB1-207ENST00000468384 YIPF6Q96EC8 236 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 VSIG2Q96IQ7 327 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 PACRGQ96M98 296 aaPredicted RBP2.86□□□□□ -1.95
HMGB1-207ENST00000468384 PHB2Q99623 299 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 RETNLBQ9BQ08 111 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 SOSTQ9BQB4 213 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 ZNF430Q9H8G1 570 aaPredicted RBP2.86□□□□□ -1.95
HMGB1-207ENST00000468384 HRASLSQ9HDD0 168 aa2.86□□□□□ -1.95
HMGB1-207ENST00000468384 TRAV2A0A0B4J234 112 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 PQLC2LA1A4F0 135 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 CPSF4LA6NMK7 179 aaKnown RBP2.85□□□□□ -1.95
HMGB1-207ENST00000468384 H7C2Y5 167 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 SDCBPO00560 298 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-207ENST00000468384 GABRPO00591 440 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 NUPL2O15504 423 aaKnown RBP2.85□□□□□ -1.95
HMGB1-207ENST00000468384 EIF3GO75821 320 aaKnown RBP eCLIP2.85□□□□□ -1.95
HMGB1-207ENST00000468384 SULT1C4O75897 302 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 ATP6V1G2O95670 118 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 OR2H2O95918 312 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 IGKV3-20P01619 116 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 CT45A6P0DMU7 189 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 CT45A5P0DMU8 189 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 CT45A7P0DMV0 189 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 RAB4AP20338 218 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 GPX4P36969 197 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-207ENST00000468384 RPS27P42677 84 aaKnown RBP2.85□□□□□ -1.95
HMGB1-207ENST00000468384 CBX5P45973 191 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 HSPA13P48723 471 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 RORCP51449 518 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 RAB14P61106 215 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 CKAP4Q07065 602 aaKnown RBP2.85□□□□□ -1.95
HMGB1-207ENST00000468384 TMEM183BQ1AE95 376 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 TIMM50Q3ZCQ8 353 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 CT45A1Q5HYN5 189 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 OGFRL1Q5TC84 451 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-207ENST00000468384 GLT8D1Q68CQ7 371 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 THOC7Q6I9Y2 204 aaKnown RBP2.85□□□□□ -1.95
HMGB1-207ENST00000468384 CGB2Q6NT52 195 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 EPGNQ6UW88 154 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 LYPD5Q6UWN5 251 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 TMEM183AQ8IXX5 376 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 CT45A3Q8NHU0 189 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 ENKURQ8TC29 256 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 DYNC2LI1Q8TCX1 351 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 FGGYQ96C11 551 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 ZNF414Q96IQ9 312 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 C20orf85Q9H1P6 137 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 ACOT13Q9NPJ3 140 aa2.85□□□□□ -1.95
HMGB1-207ENST00000468384 IGLV8-61A0A075B6I0 122 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 IGHV3OR16-13A0A075B7E8 117 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 IGHV3-49A0A0A0MS15 119 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 IGHV3-43A0A0B4J1X8 118 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 KRTAP16-1A8MUX0 517 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 PGRMC1O00264 195 aaKnown RBP2.84□□□□□ -1.95
HMGB1-207ENST00000468384 MAGEB4O15481 346 aaPredicted RBP2.84□□□□□ -1.95
HMGB1-207ENST00000468384 DENRO43583 198 aaKnown RBP2.84□□□□□ -1.95
HMGB1-207ENST00000468384 ENTPD6O75354 484 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 IGHV3-43DP0DP04 118 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 SPRR2DP22532 72 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 ZNF121P58317 390 aaPredicted RBP2.84□□□□□ -1.95
HMGB1-207ENST00000468384 FXYD7P58549 80 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 TAS2R31P59538 309 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 ST3GAL4Q11206 333 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 MLLT11Q13015 90 aaPredicted RBP2.84□□□□□ -1.95
HMGB1-207ENST00000468384 C14orf177Q52M58 125 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 GCSAMLQ5JQS6 135 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 LCE3AQ5TA76 89 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 FAAP20Q6NZ36 180 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 CNIH2Q6PI25 160 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 TMEM256Q8N2U0 113 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 PTH2Q96A98 100 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 DPH3Q96FX2 82 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 TSNAXQ99598 290 aaKnown RBP2.84□□□□□ -1.95
HMGB1-207ENST00000468384 KCTD14Q9BQ13 255 aaPredicted RBP2.84□□□□□ -1.95
HMGB1-207ENST00000468384 SELENOIQ9C0D9 397 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 NMNAT1Q9HAN9 279 aaPredicted RBP2.84□□□□□ -1.95
HMGB1-207ENST00000468384 EXOSC4Q9NPD3 245 aaKnown RBP2.84□□□□□ -1.95
HMGB1-207ENST00000468384 KCNIP1Q9NZI2 227 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 BTNL2Q9UIR0 455 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 KLF12Q9Y4X4 402 aa2.84□□□□□ -1.95
HMGB1-207ENST00000468384 MUC5BQ9HC84 5762 aaPredicted RBP2.83□□□□□ -1.96
HMGB1-207ENST00000468384 IGLV1-50A0A075B6I6 118 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 TRAV27A0A087WT01 109 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 TRAV39A0A0B4J263 110 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 IGHV7-4-1A0A0J9YVY3 117 aa2.83□□□□□ -1.96
HMGB1-207ENST00000468384 GATCO43716 136 aaKnown RBP2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms