RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TMEM41BQ5BJD5 291 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 LEMD1Q68G75 181 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 LGALS9CQ6DKI2 356 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 C11orf45Q8TAV5 145 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 RNASEH2CQ8TDP1 164 aaKnown RBP5.27□□□□□ -1.57
USP54-208ENST00000461520 GLYATL2Q8WU03 294 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 RBPMSQ93062 196 aaKnown RBP5.27□□□□□ -1.57
USP54-208ENST00000461520 RTBDNQ9BSG5 229 aaPredicted RBP5.27□□□□□ -1.57
USP54-208ENST00000461520 C1QTNF4Q9BXJ3 329 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 MIXL1Q9H2W2 232 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 NAA60Q9H7X0 242 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 MRPL36Q9P0J6 103 aaKnown RBP5.27□□□□□ -1.57
USP54-208ENST00000461520 RABL2AQ9UBK7 228 aaPredicted RBP5.27□□□□□ -1.57
USP54-208ENST00000461520 CACFD1Q9UGQ2 172 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 RABAC1Q9UI14 185 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 RABL2BQ9UNT1 228 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 GPR132Q9UNW8 380 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 CRYM-AS1A6NIL9 109 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 DISC1C4P0D8 188 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 CTDSP2O14595 271 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 CTDSPLO15194 276 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 IGKV1-17P01599 117 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 IFNA4P05014 189 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 IGLC1P0CG04 106 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 AKAIN1P0CW23 69 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 SPP1P10451 314 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 P2RY1P47900 373 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 EIF2B2P49770 351 aaKnown RBP5.26□□□□□ -1.57
USP54-208ENST00000461520 AP2S1P53680 142 aaPredicted RBP5.26□□□□□ -1.57
USP54-208ENST00000461520 TCTAP57738 103 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 TIGITQ495A1 244 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 GFI1BQ5VTD9 330 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 ETFRF1Q6IPR1 90 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 FAAP20Q6NZ36 180 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 MORN3Q6PF18 240 aaPredicted RBP5.26□□□□□ -1.57
USP54-208ENST00000461520 TRPT1Q86TN4 253 aaKnown RBP5.26□□□□□ -1.57
USP54-208ENST00000461520 NOXA1Q86UR1 476 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 SELENOHQ8IZQ5 122 aaKnown RBP5.26□□□□□ -1.57
USP54-208ENST00000461520 RPP25LQ8N5L8 163 aaKnown RBP5.26□□□□□ -1.57
USP54-208ENST00000461520 FAM24BQ8N5W8 94 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 SLC24A4Q8NFF2 622 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 STXBP6Q8NFX7 210 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 OR1S2Q8NGQ3 325 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 LHFPL5Q8TAF8 219 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 DCANP1Q8TF63 244 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 Q8WTZ3 238 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 SMIM4Q8WVI0 70 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 PRRT1Q99946 306 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 TMEM56-RWDD3S4R434 201 aa5.26□□□□□ -1.57
USP54-208ENST00000461520 HELTA6NFD8 242 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 CEBPZOSA8MTT3 80 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 C11orf94C9JXX5 98 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 ZNF688P0C7X2 276 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 MIFP14174 115 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 ALDH3B2P48448 385 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 RND2P52198 227 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 YPEL3P61236 119 aaPredicted RBP5.25□□□□□ -1.57
USP54-208ENST00000461520 IL18Q14116 193 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 TMEM268Q5VZI3 342 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 PRSS54Q6PEW0 395 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 GPR141Q7Z602 305 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 Q8NAQ8 132 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 IL22RA2Q969J5 263 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 GPR146Q96CH1 333 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 SCGB3A2Q96PL1 93 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 MRPS26Q9BYN8 205 aaKnown RBP5.25□□□□□ -1.57
USP54-208ENST00000461520 HRH4Q9H3N8 390 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 CACNG5Q9UF02 275 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 FBXL17Q9UF56 701 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 KCNIP3Q9Y2W7 256 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 VPS13DQ5THJ4 4388 aa5.25□□□□□ -1.57
USP54-208ENST00000461520 ZNF705EA8MWA4 302 aaPredicted RBP5.24□□□□□ -1.57
USP54-208ENST00000461520 DEFB4AO15263 64 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 GSTZ1O43708 216 aaPredicted RBP5.24□□□□□ -1.57
USP54-208ENST00000461520 GIG44P09565 113 aaPredicted RBP5.24□□□□□ -1.57
USP54-208ENST00000461520 SULT1A3P0DMM9 295 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 SULT1A4P0DMN0 295 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 NPY1RP25929 384 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 OR10J1P30954 320 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 SPCS2Q15005 226 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 NMSQ5H8A3 153 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 DGAT2L7PQ6IED9 249 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 C16orf54Q6UWD8 224 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 OR51S1Q8NGJ8 323 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 OR4C16Q8NGL9 310 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 RAB2BQ8WUD1 216 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 DIRAS2Q96HU8 199 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 BCL7BQ9BQE9 202 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 WDR12Q9GZL7 423 aaKnown RBP5.24□□□□□ -1.57
USP54-208ENST00000461520 SCP2D1Q9UJQ7 156 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 U3KQ87 197 aa5.24□□□□□ -1.57
USP54-208ENST00000461520 ABCA13Q86UQ4 5058 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 A0A0B4J2A0 478 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 PIGBOS1A0A0B4J2F0 54 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 IGHV4-28A0A0C4DH34 117 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 ANKRD20A5PA0PJZ0 165 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 KNCNA6PVL3 124 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 BUB3O43684 328 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 DEDDO75618 318 aa5.23□□□□□ -1.57
USP54-208ENST00000461520 GAS8-AS1O95177 125 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms