RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 SYNGR2O43760 224 aa16.4■□□□□ 0.22
PTPN4-207ENST00000460162 OR2F1Q13607 317 aa16.4■□□□□ 0.22
PTPN4-207ENST00000460162 GDF5OSQ5U4N7 250 aa16.4■□□□□ 0.22
PTPN4-207ENST00000460162 CCDC190Q86UF4 302 aa16.4■□□□□ 0.22
PTPN4-207ENST00000460162 NEU1Q99519 415 aa16.4■□□□□ 0.22
PTPN4-207ENST00000460162 RNF126Q9BV68 326 aa16.4■□□□□ 0.22
PTPN4-207ENST00000460162 CCDC160A6NGH7 325 aa16.39■□□□□ 0.21
PTPN4-207ENST00000460162 PRSS46E5RG02 174 aa16.39■□□□□ 0.21
PTPN4-207ENST00000460162 ISLRO14498 428 aa16.39■□□□□ 0.21
PTPN4-207ENST00000460162 AMBPP02760 352 aa16.39■□□□□ 0.21
PTPN4-207ENST00000460162 UBE2MP61081 183 aaKnown RBP16.39■□□□□ 0.21
PTPN4-207ENST00000460162 SPATA31B1PQ5VZV4 182 aa16.39■□□□□ 0.21
PTPN4-207ENST00000460162 OR8I2Q8N0Y5 310 aa16.39■□□□□ 0.21
PTPN4-207ENST00000460162 LINC00052Q96N35 136 aa16.39■□□□□ 0.21
PTPN4-207ENST00000460162 SLC45A2Q9UMX9 530 aa16.39■□□□□ 0.21
PTPN4-207ENST00000460162 ZNF705FA8MVS1 300 aaPredicted RBP16.38■□□□□ 0.21
PTPN4-207ENST00000460162 ZNF705DP0CH99 300 aaPredicted RBP16.38■□□□□ 0.21
PTPN4-207ENST00000460162 ZNF705BP0CI00 300 aaPredicted RBP16.38■□□□□ 0.21
PTPN4-207ENST00000460162 MEOX2P50222 304 aa16.38■□□□□ 0.21
PTPN4-207ENST00000460162 GGNBP1Q5YKI7 109 aa16.38■□□□□ 0.21
PTPN4-207ENST00000460162 HECTD4Q9Y4D8 3996 aa16.37■□□□□ 0.21
PTPN4-207ENST00000460162 TMEM189A5PLL7 270 aa16.37■□□□□ 0.21
PTPN4-207ENST00000460162 WRBO00258 174 aa16.37■□□□□ 0.21
PTPN4-207ENST00000460162 HOXB5P09067 269 aa16.37■□□□□ 0.21
PTPN4-207ENST00000460162 PAX9P55771 341 aa16.37■□□□□ 0.21
PTPN4-207ENST00000460162 C12orf74Q32Q52 190 aa16.37■□□□□ 0.21
PTPN4-207ENST00000460162 MAGT1Q9H0U3 335 aa16.37■□□□□ 0.21
PTPN4-207ENST00000460162 DEFB131BA0A096LNP1 70 aa16.36■□□□□ 0.21
PTPN4-207ENST00000460162 SMIM9A6NGZ8 99 aa16.36■□□□□ 0.21
PTPN4-207ENST00000460162 IGKV3-20P01619 116 aa16.36■□□□□ 0.21
PTPN4-207ENST00000460162 DEFB1P60022 68 aa16.36■□□□□ 0.21
PTPN4-207ENST00000460162 SPANXN2Q5MJ10 180 aa16.36■□□□□ 0.21
PTPN4-207ENST00000460162 ZNF709Q8N972 641 aa16.36■□□□□ 0.21
PTPN4-207ENST00000460162 RBM38Q9H0Z9 239 aaKnown RBP16.36■□□□□ 0.21
PTPN4-207ENST00000460162 GALR1P47211 349 aa16.35■□□□□ 0.21
PTPN4-207ENST00000460162 BPIFCQ8NFQ6 507 aa16.35■□□□□ 0.21
PTPN4-207ENST00000460162 SRRQ9GZT4 340 aa16.35■□□□□ 0.21
PTPN4-207ENST00000460162 S100A7P31151 101 aa16.34■□□□□ 0.21
PTPN4-207ENST00000460162 AKR1C1Q04828 323 aa16.34■□□□□ 0.21
PTPN4-207ENST00000460162 SPANXN5Q5MJ07 72 aa16.34■□□□□ 0.21
PTPN4-207ENST00000460162 EBLN2Q6P2I7 272 aa16.34■□□□□ 0.21
PTPN4-207ENST00000460162 ACOT7LQ6ZUV0 252 aa16.34■□□□□ 0.21
PTPN4-207ENST00000460162 ZNF767PQ75MW2 155 aa16.34■□□□□ 0.21
PTPN4-207ENST00000460162 OR4B1Q8NGF8 309 aa16.34■□□□□ 0.21
PTPN4-207ENST00000460162 SLC25A32Q9H2D1 315 aa16.34■□□□□ 0.21
PTPN4-207ENST00000460162 RPRMQ9NS64 109 aa16.34■□□□□ 0.21
PTPN4-207ENST00000460162 STRAPQ9Y3F4 350 aaKnown RBP16.34■□□□□ 0.21
PTPN4-207ENST00000460162 RFNGQ9Y644 331 aa16.34■□□□□ 0.21
PTPN4-207ENST00000460162 TEX48A0A1B0GUV7 120 aa16.33■□□□□ 0.2
PTPN4-207ENST00000460162 NAP1L6A6NFF2 107 aa16.33■□□□□ 0.2
PTPN4-207ENST00000460162 H3BP45 60 aa16.33■□□□□ 0.2
PTPN4-207ENST00000460162 ZNF701M0R085 212 aaPredicted RBP16.33■□□□□ 0.2
PTPN4-207ENST00000460162 FXYD7P58549 80 aa16.33■□□□□ 0.2
PTPN4-207ENST00000460162 OR4D5Q8NGN0 318 aa16.33■□□□□ 0.2
PTPN4-207ENST00000460162 GPR82Q96P67 336 aa16.33■□□□□ 0.2
PTPN4-207ENST00000460162 SLC25A22Q9H936 323 aa16.33■□□□□ 0.2
PTPN4-207ENST00000460162 A0A0J9YX75 114 aa16.32■□□□□ 0.2
PTPN4-207ENST00000460162 C9orf170A2RU37 121 aa16.32■□□□□ 0.2
PTPN4-207ENST00000460162 ZNF98A6NK75 572 aa16.32■□□□□ 0.2
PTPN4-207ENST00000460162 NDUFB6O95139 128 aa16.32■□□□□ 0.2
PTPN4-207ENST00000460162 SPART-AS1P0CW21 52 aa16.32■□□□□ 0.2
PTPN4-207ENST00000460162 PSG9Q00887 426 aa16.32■□□□□ 0.2
PTPN4-207ENST00000460162 C16orf92Q96LL3 132 aa16.32■□□□□ 0.2
PTPN4-207ENST00000460162 TMEM147Q9BVK8 224 aa16.32■□□□□ 0.2
PTPN4-207ENST00000460162 SLC35B3Q9H1N7 401 aa16.32■□□□□ 0.2
PTPN4-207ENST00000460162 IGHV3OR16-12A0A075B7B8 117 aa16.31■□□□□ 0.2
PTPN4-207ENST00000460162 F6UB75 175 aa16.31■□□□□ 0.2
PTPN4-207ENST00000460162 INPP1P49441 399 aa16.31■□□□□ 0.2
PTPN4-207ENST00000460162 ID3Q02535 119 aa16.31■□□□□ 0.2
PTPN4-207ENST00000460162 FAM78BQ5VT40 261 aa16.31■□□□□ 0.2
PTPN4-207ENST00000460162 TRIQKQ629K1 86 aa16.31■□□□□ 0.2
PTPN4-207ENST00000460162 OR1B1Q8NGR6 318 aa16.31■□□□□ 0.2
PTPN4-207ENST00000460162 NDUFAF3Q9BU61 184 aa16.31■□□□□ 0.2
PTPN4-207ENST00000460162 GOLT1BQ9Y3E0 138 aa16.31■□□□□ 0.2
PTPN4-207ENST00000460162 ADAP1O75689 374 aa16.3■□□□□ 0.2
PTPN4-207ENST00000460162 ORM2P19652 201 aa16.3■□□□□ 0.2
PTPN4-207ENST00000460162 TMEM144Q7Z5S9 345 aa16.3■□□□□ 0.2
PTPN4-207ENST00000460162 DOK5Q9P104 306 aa16.3■□□□□ 0.2
PTPN4-207ENST00000460162 A8MTW9 85 aa16.29■□□□□ 0.2
PTPN4-207ENST00000460162 P0DMU3 169 aa16.29■□□□□ 0.2
PTPN4-207ENST00000460162 FAM231AP0DMU4 169 aa16.29■□□□□ 0.2
PTPN4-207ENST00000460162 FAM231CP0DMU5 169 aa16.29■□□□□ 0.2
PTPN4-207ENST00000460162 GATA2P23769 480 aaPredicted RBP16.29■□□□□ 0.2
PTPN4-207ENST00000460162 EMP1P54849 157 aa16.29■□□□□ 0.2
PTPN4-207ENST00000460162 POLR2GP62487 172 aaKnown RBP eCLIP16.29■□□□□ 0.2
PTPN4-207ENST00000460162 TMEM182Q6ZP80 229 aaPredicted RBP16.29■□□□□ 0.2
PTPN4-207ENST00000460162 C20orf173Q96LM9 149 aa16.29■□□□□ 0.2
PTPN4-207ENST00000460162 RSG1Q9BU20 258 aa16.29■□□□□ 0.2
PTPN4-207ENST00000460162 GSG1LQ6UXU4 331 aa16.28■□□□□ 0.2
PTPN4-207ENST00000460162 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.28■□□□□ 0.2
PTPN4-207ENST00000460162 C17orf77Q96MU5 243 aa16.28■□□□□ 0.2
PTPN4-207ENST00000460162 DKK2Q9UBU2 259 aa16.28■□□□□ 0.2
PTPN4-207ENST00000460162 SMCO3A2RU48 225 aa16.27■□□□□ 0.2
PTPN4-207ENST00000460162 H3BRN7 92 aa16.27■□□□□ 0.2
PTPN4-207ENST00000460162 IFNA21P01568 189 aa16.27■□□□□ 0.2
PTPN4-207ENST00000460162 HBE1P02100 147 aa16.27■□□□□ 0.2
PTPN4-207ENST00000460162 OR4E1P0C645 316 aa16.27■□□□□ 0.2
PTPN4-207ENST00000460162 BAK1Q16611 211 aa16.27■□□□□ 0.2
PTPN4-207ENST00000460162 CYP2G1PQ6ZSU1 146 aa16.27■□□□□ 0.2
PTPN4-207ENST00000460162 C1orf158Q8N1D5 194 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms