RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 SMCO3A2RU48 225 aa12.79□□□□□ -0.36
USP39-208ENST00000455732 DEFB131AP59861 70 aa12.79□□□□□ -0.36
USP39-208ENST00000455732 ZNF124Q15973 351 aa12.79□□□□□ -0.36
USP39-208ENST00000455732 STPG3Q8N7X2 389 aa12.79□□□□□ -0.36
USP39-208ENST00000455732 NPVFQ9HCQ7 196 aa12.79□□□□□ -0.36
USP39-208ENST00000455732 MGAT4CQ9UBM8 478 aa12.79□□□□□ -0.36
USP39-208ENST00000455732 FBXL17Q9UF56 701 aa12.79□□□□□ -0.36
USP39-208ENST00000455732 TP53TG1Q9Y2A0 90 aa12.79□□□□□ -0.36
USP39-208ENST00000455732 DEDDO75618 318 aa12.78□□□□□ -0.36
USP39-208ENST00000455732 PVALBP20472 110 aaPredicted RBP12.78□□□□□ -0.36
USP39-208ENST00000455732 RRAS2P62070 204 aaPredicted RBP12.78□□□□□ -0.36
USP39-208ENST00000455732 SELENOTP62341 195 aa12.78□□□□□ -0.36
USP39-208ENST00000455732 ARL16Q0P5N6 197 aa12.78□□□□□ -0.36
USP39-208ENST00000455732 TMEM182Q6ZP80 229 aaPredicted RBP12.78□□□□□ -0.36
USP39-208ENST00000455732 CYP2G1PQ6ZSU1 146 aa12.78□□□□□ -0.36
USP39-208ENST00000455732 RPL35AP18077 110 aaKnown RBP12.77□□□□□ -0.37
USP39-208ENST00000455732 S100A10P60903 97 aa12.77□□□□□ -0.37
USP39-208ENST00000455732 RAB32Q13637 225 aa12.77□□□□□ -0.37
USP39-208ENST00000455732 OVOL2Q9BRP0 275 aa12.77□□□□□ -0.37
USP39-208ENST00000455732 LYRM2Q9NU23 88 aaPredicted RBP12.77□□□□□ -0.37
USP39-208ENST00000455732 GOSR2O14653 212 aa12.76□□□□□ -0.37
USP39-208ENST00000455732 ZNF688P0C7X2 276 aa12.76□□□□□ -0.37
USP39-208ENST00000455732 GATA2P23769 480 aaPredicted RBP12.76□□□□□ -0.37
USP39-208ENST00000455732 S100A7P31151 101 aa12.76□□□□□ -0.37
USP39-208ENST00000455732 BCAP31P51572 246 aa12.76□□□□□ -0.37
USP39-208ENST00000455732 CAV2P51636 162 aa12.76□□□□□ -0.37
USP39-208ENST00000455732 PLP1P60201 277 aa12.76□□□□□ -0.37
USP39-208ENST00000455732 LEMD1Q68G75 181 aa12.76□□□□□ -0.37
USP39-208ENST00000455732 TEPPQ6URK8 271 aa12.76□□□□□ -0.37
USP39-208ENST00000455732 PPP1R14BQ96C90 147 aa12.76□□□□□ -0.37
USP39-208ENST00000455732 NMES1Q9C002 83 aa12.76□□□□□ -0.37
USP39-208ENST00000455732 CSTL1Q9H114 145 aa12.76□□□□□ -0.37
USP39-208ENST00000455732 AGRNO00468 2067 aa12.76□□□□□ -0.37
USP39-208ENST00000455732 RYR2Q92736 4967 aa12.75□□□□□ -0.37
USP39-208ENST00000455732 SNRPD3P62318 126 aaKnown RBP12.75□□□□□ -0.37
USP39-208ENST00000455732 SLC38A11Q08AI6 406 aa12.75□□□□□ -0.37
USP39-208ENST00000455732 ZFAND6Q6FIF0 208 aa12.75□□□□□ -0.37
USP39-208ENST00000455732 LYSTQ99698 3801 aa12.75□□□□□ -0.37
USP39-208ENST00000455732 TMEM147Q9BVK8 224 aa12.75□□□□□ -0.37
USP39-208ENST00000455732 FAM24AA6NFZ4 105 aa12.74□□□□□ -0.37
USP39-208ENST00000455732 ZNF98A6NK75 572 aa12.74□□□□□ -0.37
USP39-208ENST00000455732 LINC00869P0C866 280 aa12.74□□□□□ -0.37
USP39-208ENST00000455732 ORM2P19652 201 aa12.74□□□□□ -0.37
USP39-208ENST00000455732 SULT1A1P50225 295 aa12.74□□□□□ -0.37
USP39-208ENST00000455732 DEFB135Q30KP9 77 aa12.74□□□□□ -0.37
USP39-208ENST00000455732 ZNF546Q86UE3 836 aa12.74□□□□□ -0.37
USP39-208ENST00000455732 STHQ8IWL8 128 aa12.74□□□□□ -0.37
USP39-208ENST00000455732 OR8I2Q8N0Y5 310 aa12.74□□□□□ -0.37
USP39-208ENST00000455732 TMEM252Q8N6L7 170 aa12.74□□□□□ -0.37
USP39-208ENST00000455732 OR1B1Q8NGR6 318 aa12.74□□□□□ -0.37
USP39-208ENST00000455732 RNF183Q96D59 192 aa12.74□□□□□ -0.37
USP39-208ENST00000455732 SACSQ9NZJ4 4579 aa12.74□□□□□ -0.37
USP39-208ENST00000455732 SOCS3O14543 225 aa12.73□□□□□ -0.37
USP39-208ENST00000455732 SPRY2O43597 315 aa12.73□□□□□ -0.37
USP39-208ENST00000455732 CST7O76096 145 aa12.73□□□□□ -0.37
USP39-208ENST00000455732 SIX6O95475 246 aa12.73□□□□□ -0.37
USP39-208ENST00000455732 PTTG1O95997 202 aa12.73□□□□□ -0.37
USP39-208ENST00000455732 CYCSP99999 105 aaKnown RBP12.73□□□□□ -0.37
USP39-208ENST00000455732 VWC2Q2TAL6 325 aa12.73□□□□□ -0.37
USP39-208ENST00000455732 PSMG4Q5JS54 123 aa12.73□□□□□ -0.37
USP39-208ENST00000455732 PXDC1Q5TGL8 231 aa12.73□□□□□ -0.37
USP39-208ENST00000455732 SAMD13Q5VXD3 122 aa12.73□□□□□ -0.37
USP39-208ENST00000455732 TRPT1Q86TN4 253 aaKnown RBP12.73□□□□□ -0.37
USP39-208ENST00000455732 STX12Q86Y82 276 aa12.73□□□□□ -0.37
USP39-208ENST00000455732 GPR82Q96P67 336 aa12.73□□□□□ -0.37
USP39-208ENST00000455732 IGSF23A1L1A6 192 aa12.72□□□□□ -0.37
USP39-208ENST00000455732 H3BRN7 92 aa12.72□□□□□ -0.37
USP39-208ENST00000455732 HYPMO75409 117 aa12.72□□□□□ -0.37
USP39-208ENST00000455732 S100A11P31949 105 aa12.72□□□□□ -0.37
USP39-208ENST00000455732 GALR1P47211 349 aa12.72□□□□□ -0.37
USP39-208ENST00000455732 PSMB3P49720 205 aa12.72□□□□□ -0.37
USP39-208ENST00000455732 H2BFSP57053 126 aa12.72□□□□□ -0.37
USP39-208ENST00000455732 RAP2BP61225 183 aa12.72□□□□□ -0.37
USP39-208ENST00000455732 S100A7AQ86SG5 101 aa12.72□□□□□ -0.37
USP39-208ENST00000455732 SHANK2-AS3Q9BTD1 123 aa12.72□□□□□ -0.37
USP39-208ENST00000455732 SLC25A39Q9BZJ4 359 aaPredicted RBP12.72□□□□□ -0.37
USP39-208ENST00000455732 SLC25A32Q9H2D1 315 aa12.72□□□□□ -0.37
USP39-208ENST00000455732 UQCC1Q9NVA1 299 aa12.72□□□□□ -0.37
USP39-208ENST00000455732 HIGD1AQ9Y241 93 aa12.72□□□□□ -0.37
USP39-208ENST00000455732 AGPAT2O15120 278 aa12.71□□□□□ -0.37
USP39-208ENST00000455732 SSNA1O43805 119 aa12.71□□□□□ -0.37
USP39-208ENST00000455732 SPP1P10451 314 aa12.71□□□□□ -0.37
USP39-208ENST00000455732 MEOX2P50222 304 aa12.71□□□□□ -0.37
USP39-208ENST00000455732 HBG1P69891 147 aa12.71□□□□□ -0.37
USP39-208ENST00000455732 HBG2P69892 147 aa12.71□□□□□ -0.37
USP39-208ENST00000455732 TMEM217Q8N7C4 229 aa12.71□□□□□ -0.37
USP39-208ENST00000455732 GATAD1Q8WUU5 269 aa12.71□□□□□ -0.37
USP39-208ENST00000455732 MGST2Q99735 147 aa12.71□□□□□ -0.37
USP39-208ENST00000455732 DOK5Q9P104 306 aa12.71□□□□□ -0.37
USP39-208ENST00000455732 KNCNA6PVL3 124 aa12.7□□□□□ -0.38
USP39-208ENST00000455732 E5RGE8 158 aa12.7□□□□□ -0.38
USP39-208ENST00000455732 ISLRO14498 428 aa12.7□□□□□ -0.38
USP39-208ENST00000455732 RLN2P04090 185 aa12.7□□□□□ -0.38
USP39-208ENST00000455732 ID1P41134 155 aa12.7□□□□□ -0.38
USP39-208ENST00000455732 TMEM41BQ5BJD5 291 aa12.7□□□□□ -0.38
USP39-208ENST00000455732 ACTL10Q5JWF8 245 aa12.7□□□□□ -0.38
USP39-208ENST00000455732 MORN3Q6PF18 240 aaPredicted RBP12.7□□□□□ -0.38
USP39-208ENST00000455732 SCRT1Q9BWW7 348 aa12.7□□□□□ -0.38
USP39-208ENST00000455732 SLC25A22Q9H936 323 aa12.7□□□□□ -0.38
USP39-208ENST00000455732 RNF24Q9Y225 148 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 156.4 ms