RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 TMEM70Q9BUB7 260 aa5.29□□□□□ -1.56
LIMCH1-204ENST00000446625 PDCD10Q9BUL8 212 aa5.29□□□□□ -1.56
LIMCH1-204ENST00000446625 PBDC1Q9BVG4 233 aa5.29□□□□□ -1.56
LIMCH1-204ENST00000446625 NOP10Q9NPE3 64 aaKnown RBP5.29□□□□□ -1.56
LIMCH1-204ENST00000446625 BATF3Q9NR55 127 aa5.29□□□□□ -1.56
LIMCH1-204ENST00000446625 RPRMQ9NS64 109 aa5.29□□□□□ -1.56
LIMCH1-204ENST00000446625 TRAV12-2A0A075B6T6 113 aa5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 A0A0A6YYH2 397 aa5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 A6NJ64 397 aa5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 PLA2G1BP04054 148 aaKnown RBP5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 HTN1P15515 57 aa5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 NUP62P37198 522 aaPredicted RBP5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 CNN1P51911 297 aaKnown RBP5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 AKR1C2P52895 323 aa5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 TAS2R46P59540 309 aa5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 GPR141Q7Z602 305 aa5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 LYSMD2Q8IV50 215 aa5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 TMEM170AQ8WVE7 144 aa5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 LINC01587Q99440 93 aa5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 DIABLOQ9NR28 239 aa5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 FAM30AQ9NZY2 134 aa5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 ANAPC10Q9UM13 185 aa5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 SSR3Q9UNL2 185 aa5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 TIMM8BQ9Y5J9 83 aaPredicted RBP5.28□□□□□ -1.56
LIMCH1-204ENST00000446625 H3BNG1 76 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 NAT1P18440 290 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 UCP1P25874 307 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 HRH1P35367 487 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 HTR2BP41595 481 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 TAS2R60P59551 318 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 SUPT4H1P63272 117 aaKnown RBP5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 NEDD8Q15843 81 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 C2orf83Q53S99 150 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 C1orf194Q5T5A4 169 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 OR8G2PQ6IF36 304 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 LPCAT3Q6P1A2 487 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 TMEM144Q7Z5S9 345 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 NFE4Q86UQ8 179 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 OR8I2Q8N0Y5 310 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 LINC00612Q8N6U2 182 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 OR10J6PQ8NGY7 276 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 RNASEH2CQ8TDP1 164 aaKnown RBP5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 C16orf74Q96GX8 76 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 C16orf92Q96LL3 132 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 RBM38Q9H0Z9 239 aaKnown RBP5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 PFDN2Q9UHV9 154 aa5.27□□□□□ -1.57
LIMCH1-204ENST00000446625 A0A096LPF7 62 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 IGLV5-52A0A0A0MRZ9 124 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 A0A0G2JRQ6 117 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 DUSP14O95147 198 aaKnown RBP5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 NXPH4O95158 308 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 HLA-DMAP28067 261 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 SCAND1P57086 179 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 SPCS3P61009 180 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 TSPAN5P62079 268 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 LSM3P62310 102 aaKnown RBP5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 SAMD13Q5VXD3 122 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 ETFRF1Q6IPR1 90 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 SLC24A4Q8NFF2 622 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 RNASE8Q8TDE3 154 aaKnown RBP5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 VSIG2Q96IQ7 327 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 TP53RKQ96S44 253 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 SLC25A39Q9BZJ4 359 aaPredicted RBP5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 VCX3AQ9NNX9 186 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 HEYLQ9NQ87 328 aaPredicted RBP5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 LRP2P98164 4655 aa5.26□□□□□ -1.57
LIMCH1-204ENST00000446625 PKHD1L1Q86WI1 4243 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 SMIM31A0A1B0GVY4 71 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 GAGE12BA1L429 117 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 BOLA2-SMG1P6H3BVE0 249 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 GAGE7O76087 117 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 GAGE12FP0CL80 117 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 GAGE12GP0CL81 117 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 GAGE12IP0CL82 117 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 PI3P19957 117 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 MEOX2P50222 304 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 UCP3P55916 312 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 LYZP61626 148 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 ZNF90Q03938 601 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 AARDQ4LEZ3 155 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 IGFL4Q6B9Z1 124 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 ZNF493Q6ZR52 646 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 TMED4Q7Z7H5 227 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 TMEM256Q8N2U0 113 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 RNF182Q8N6D2 247 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 SAMD12Q8N8I0 201 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 TMEM263Q8WUH6 116 aaKnown RBP5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 PPP1R14BQ96C90 147 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 YIPF6Q96EC8 236 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 RSG1Q9BU20 258 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 NDUFA13Q9P0J0 144 aa5.25□□□□□ -1.57
LIMCH1-204ENST00000446625 IGKV1D-37A0A075B6S9 117 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 TRAV8-2A0A0B4J237 113 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 ZFP92A6NM28 416 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 ADAP1O75689 374 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 ATG12O94817 140 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 OXTP01178 125 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 PGAM2P15259 253 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 ZNF182P17025 639 aaPredicted RBP5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 RND3P61587 244 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms