RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 CFHR2P36980 270 aa9.6□□□□□ -0.87
MSH6-204ENST00000445503 SEM1Q6ZVN7 128 aa9.6□□□□□ -0.87
MSH6-204ENST00000445503 AAMDCQ9H7C9 122 aa9.6□□□□□ -0.87
MSH6-204ENST00000445503 MEF2CQ06413 473 aaPredicted RBP9.59□□□□□ -0.87
MSH6-204ENST00000445503 LGALS7P47929 136 aa9.59□□□□□ -0.87
MSH6-204ENST00000445503 TMEM167AQ8TBQ9 72 aa9.59□□□□□ -0.87
MSH6-204ENST00000445503 FAM215AQ9Y5M1 114 aa9.59□□□□□ -0.87
MSH6-204ENST00000445503 SMIM27A0A1W2PRY6 76 aa9.59□□□□□ -0.87
MSH6-204ENST00000445503 IGHV3-23P01764 117 aa9.59□□□□□ -0.87
MSH6-204ENST00000445503 RIGQ13278 110 aa9.59□□□□□ -0.87
MSH6-204ENST00000445503 ZNF841Q6ZN19 808 aa9.59□□□□□ -0.87
MSH6-204ENST00000445503 MUC15Q8N387 334 aa9.59□□□□□ -0.87
MSH6-204ENST00000445503 MRPL36Q9P0J6 103 aaKnown RBP9.59□□□□□ -0.87
MSH6-204ENST00000445503 COL6A3P12111 3177 aa9.58□□□□□ -0.88
MSH6-204ENST00000445503 TSPOP30536 169 aa9.58□□□□□ -0.88
MSH6-204ENST00000445503 ARF6P62330 175 aa9.58□□□□□ -0.88
MSH6-204ENST00000445503 RELQ04864 619 aaPredicted RBP9.58□□□□□ -0.88
MSH6-204ENST00000445503 PLA2G2CQ5R387 149 aa9.58□□□□□ -0.88
MSH6-204ENST00000445503 SLC25A34Q6PIV7 304 aa9.58□□□□□ -0.88
MSH6-204ENST00000445503 C22orf34Q6ZV56 151 aa9.58□□□□□ -0.88
MSH6-204ENST00000445503 PNKDQ8N490 385 aa9.58□□□□□ -0.88
MSH6-204ENST00000445503 LHBP01229 141 aa9.58□□□□□ -0.88
MSH6-204ENST00000445503 IL4P05112 153 aa9.58□□□□□ -0.88
MSH6-204ENST00000445503 LINC00310P59036 64 aa9.58□□□□□ -0.88
MSH6-204ENST00000445503 ADIPOQQ15848 244 aa9.58□□□□□ -0.88
MSH6-204ENST00000445503 ZFP30Q9Y2G7 519 aa9.58□□□□□ -0.88
MSH6-204ENST00000445503 ITGB1BP1O14713 200 aa9.58□□□□□ -0.88
MSH6-204ENST00000445503 RBPMS2Q6ZRY4 209 aaKnown RBP9.58□□□□□ -0.88
MSH6-204ENST00000445503 IGHV1-69-2A0A0G2JMI3 117 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 K7EM74 188 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 PSG1P11464 419 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 KLF17Q5JT82 389 aaPredicted RBP9.57□□□□□ -0.88
MSH6-204ENST00000445503 FNDC10F2Z333 226 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 APOHP02749 345 aaPredicted RBP9.57□□□□□ -0.88
MSH6-204ENST00000445503 CD3EP07766 207 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 RBPJQ06330 500 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 PATE2Q6UY27 113 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 BPIFA4PQ86YQ2 179 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 WFDC3Q8IUB2 231 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 RITA1Q96K30 269 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 WDFY3Q8IZQ1 3526 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 DSCAMO60469 2012 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 LINC00614P0C842 121 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 FXYD7P58549 80 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 TMEM30BQ3MIR4 351 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 ASCL5Q7RTU5 278 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 IGFBPL1Q8WX77 278 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 SCNM1Q9BWG6 230 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 HSPB8Q9UJY1 196 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 DYSFO75923 2080 aa9.57□□□□□ -0.88
MSH6-204ENST00000445503 IGLV3-9A0A075B6K5 115 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 PPIAL4CA0A0B4J2A2 164 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 TMEM178BH3BS89 294 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 PPIAL4GP0DN37 164 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 LINC01560Q8TB33 94 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 FAM167A-AS1Q96KT0 104 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 TCRAP04437 139 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 IGLL1P15814 213 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 POU2AF1Q16633 256 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 FAM57AQ8TBR7 257 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 FXYD5Q96DB9 178 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 ALKBH7Q9BT30 221 aaPredicted RBP9.56□□□□□ -0.88
MSH6-204ENST00000445503 TLN1Q9Y490 2541 aaKnown RBP9.56□□□□□ -0.88
MSH6-204ENST00000445503 CGB3P0DN86 165 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 CGB7P0DN87 165 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 MPV17L2Q567V2 206 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 EBLN2Q6P2I7 272 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 PPP1R27Q86WC6 154 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 OR5AN1Q8NGI8 311 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 AP5S1Q9NUS5 200 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 TET2Q6N021 2002 aaPredicted RBP9.56□□□□□ -0.88
MSH6-204ENST00000445503 ORM1P02763 201 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 BMI1P35226 326 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 TMEM133Q9H2Q1 129 aa9.56□□□□□ -0.88
MSH6-204ENST00000445503 RALYQ9UKM9 306 aaKnown RBP9.56□□□□□ -0.88
MSH6-204ENST00000445503 ANKHD1Q8IWZ3 2542 aaKnown RBP9.55□□□□□ -0.88
MSH6-204ENST00000445503 GATA4P43694 442 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 ZNF833PQ6ZTB9 187 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 ABHD17AQ96GS6 310 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 PCSK5Q92824 1860 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 ZNF785A8K8V0 405 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 IGLV2-8P01709 118 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 IGHV1-8P0DP01 117 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 RNASE6Q93091 150 aaKnown RBP9.55□□□□□ -0.88
MSH6-204ENST00000445503 FMC1Q96HJ9 113 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 TMUB1Q9BVT8 246 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 IGHV3OR16-13A0A075B7E8 117 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 IGHV3-74A0A0B4J1X5 117 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 A0A1B0GUT8 65 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 HLA-DRB1P01911 266 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 LIPFP07098 398 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 AARDQ4LEZ3 155 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 LINC00173Q6ZV60 143 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 IGF2BP2-AS1Q96M15 143 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 MRPL27Q9P0M9 148 aaKnown RBP9.55□□□□□ -0.88
MSH6-204ENST00000445503 TP73-AS1Q9UF72 201 aa9.55□□□□□ -0.88
MSH6-204ENST00000445503 CREBBPQ92793 2442 aa9.54□□□□□ -0.88
MSH6-204ENST00000445503 A0A0G2JNJ9 132 aa9.54□□□□□ -0.88
MSH6-204ENST00000445503 M0R3E3 92 aa9.54□□□□□ -0.88
MSH6-204ENST00000445503 FAM169BQ8N8A8 192 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms