RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 SLC39A9Q9NUM3 307 aa9.14□□□□□ -0.95
LINC00539-202ENST00000423575 PXMP4Q9Y6I8 212 aa9.14□□□□□ -0.95
LINC00539-202ENST00000423575 IZUMO1RA6ND01 250 aa9.13□□□□□ -0.95
LINC00539-202ENST00000423575 HYPMO75409 117 aa9.13□□□□□ -0.95
LINC00539-202ENST00000423575 ZNF266Q14584 549 aa9.13□□□□□ -0.95
LINC00539-202ENST00000423575 RPL7L1Q6DKI1 246 aaKnown RBP9.13□□□□□ -0.95
LINC00539-202ENST00000423575 PATE2Q6UY27 113 aa9.13□□□□□ -0.95
LINC00539-202ENST00000423575 TMEM61Q8N0U2 210 aa9.13□□□□□ -0.95
LINC00539-202ENST00000423575 SCGB1C1Q8TD33 95 aa9.13□□□□□ -0.95
LINC00539-202ENST00000423575 RNF2Q99496 336 aa9.13□□□□□ -0.95
LINC00539-202ENST00000423575 ARL6Q9H0F7 186 aa9.13□□□□□ -0.95
LINC00539-202ENST00000423575 CYTL1Q9NRR1 136 aa9.13□□□□□ -0.95
LINC00539-202ENST00000423575 TECRQ9NZ01 308 aaKnown RBP9.13□□□□□ -0.95
LINC00539-202ENST00000423575 RFNGQ9Y644 331 aa9.13□□□□□ -0.95
LINC00539-202ENST00000423575 BUB3O43684 328 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 COX7A2P2O60397 106 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 OR5G3P0C626 314 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 BMI1P35226 326 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 KRTAP10-11P60412 298 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 EGFEM1PQ0D2K5 195 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 BEAN1Q3B7T3 259 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 ZFP69Q49AA0 526 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 GCSAMLQ5JQS6 135 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 KPRPQ5T749 579 aaPredicted RBP9.12□□□□□ -0.95
LINC00539-202ENST00000423575 PXDC1Q5TGL8 231 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 ZNF709Q8N972 641 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 HSD17B11Q8NBQ5 300 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 GLMPQ8WWB7 406 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 TMEM37Q8WXS4 190 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 PPP1R14BQ96C90 147 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 NARS2Q96I59 477 aaKnown RBP9.12□□□□□ -0.95
LINC00539-202ENST00000423575 UHRF2Q96PU4 802 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 SCRT1Q9BWW7 348 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 KCNIP2Q9NS61 270 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 HIGD1AQ9Y241 93 aa9.12□□□□□ -0.95
LINC00539-202ENST00000423575 BORCS7-ASMTA0A0B4J1R7 106 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 A0A0D9SG52 128 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 A0A1W2PS18 150 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 C17orf112F2Z3M2 114 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 H3BRN7 92 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 TAAR5O14804 337 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 BCL2L11O43521 198 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 ATP6V0CP27449 155 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 LGALSLQ3ZCW2 172 aaPredicted RBP9.11□□□□□ -0.95
LINC00539-202ENST00000423575 FAM90A2PQ658T7 463 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 LEMD1Q68G75 181 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 LCN12Q6JVE5 192 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 C16orf54Q6UWD8 224 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 Q6ZRG5 221 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 TMUB2Q71RG4 321 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 TCF24Q7RTU0 167 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 OR2K2Q8NGT1 345 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 GRAMD2BQ96HH9 432 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 HYLS1Q96M11 299 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 ARPC5LQ9BPX5 153 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 SHANK2-AS3Q9BTD1 123 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 SLC25A39Q9BZJ4 359 aaPredicted RBP9.11□□□□□ -0.95
LINC00539-202ENST00000423575 ARV1Q9H2C2 271 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 TMEM231Q9H6L2 316 aa9.11□□□□□ -0.95
LINC00539-202ENST00000423575 DNAH3Q8TD57 4116 aa9.1□□□□□ -0.95
LINC00539-202ENST00000423575 TRAV25A0A0B4J276 109 aa9.1□□□□□ -0.95
LINC00539-202ENST00000423575 ZNF98A6NK75 572 aa9.1□□□□□ -0.95
LINC00539-202ENST00000423575 FFAR4Q5NUL3 377 aa9.1□□□□□ -0.95
LINC00539-202ENST00000423575 MORN5Q5VZ52 161 aa9.1□□□□□ -0.95
LINC00539-202ENST00000423575 C9orf62Q8N4C0 152 aa9.1□□□□□ -0.95
LINC00539-202ENST00000423575 SH3BGRL3Q9H299 93 aa9.1□□□□□ -0.95
LINC00539-202ENST00000423575 PFDN2Q9UHV9 154 aa9.1□□□□□ -0.95
LINC00539-202ENST00000423575 TIMM9Q9Y5J7 89 aa9.1□□□□□ -0.95
LINC00539-202ENST00000423575 ELOA3CA0A087WX78 387 aaPredicted RBP9.09□□□□□ -0.95
LINC00539-202ENST00000423575 KANTRA0A1W2PQU2 76 aa9.09□□□□□ -0.95
LINC00539-202ENST00000423575 ZNF785A8K8V0 405 aa9.09□□□□□ -0.95
LINC00539-202ENST00000423575 TSPAN4O14817 238 aa9.09□□□□□ -0.95
LINC00539-202ENST00000423575 PFDN1O60925 122 aa9.09□□□□□ -0.95
LINC00539-202ENST00000423575 JTBO76095 146 aa9.09□□□□□ -0.95
LINC00539-202ENST00000423575 GUCA2BQ16661 112 aa9.09□□□□□ -0.95
LINC00539-202ENST00000423575 C1orf194Q5T5A4 169 aa9.09□□□□□ -0.95
LINC00539-202ENST00000423575 C10orf113Q5VZT2 155 aa9.09□□□□□ -0.95
LINC00539-202ENST00000423575 LAMTOR1Q6IAA8 161 aa9.09□□□□□ -0.95
LINC00539-202ENST00000423575 RBPMS2Q6ZRY4 209 aaKnown RBP9.09□□□□□ -0.95
LINC00539-202ENST00000423575 LINC00305Q7Z4B0 112 aa9.09□□□□□ -0.95
LINC00539-202ENST00000423575 OR1L4Q8NGR5 311 aa9.09□□□□□ -0.95
LINC00539-202ENST00000423575 PSMG3Q9BT73 122 aaPredicted RBP9.09□□□□□ -0.95
LINC00539-202ENST00000423575 SLC25A32Q9H2D1 315 aa9.09□□□□□ -0.95
LINC00539-202ENST00000423575 SLC25A22Q9H936 323 aa9.09□□□□□ -0.95
LINC00539-202ENST00000423575 DNAJC4Q9NNZ3 241 aa9.09□□□□□ -0.95
LINC00539-202ENST00000423575 ZNF256Q9Y2P7 627 aaPredicted RBP9.09□□□□□ -0.95
LINC00539-202ENST00000423575 IGKV3-7A0A075B6H7 116 aa9.08□□□□□ -0.96
LINC00539-202ENST00000423575 GP9P14770 177 aa9.08□□□□□ -0.96
LINC00539-202ENST00000423575 NKX2-5P52952 324 aaPredicted RBP9.08□□□□□ -0.96
LINC00539-202ENST00000423575 SPATA31B1PQ5VZV4 182 aa9.08□□□□□ -0.96
LINC00539-202ENST00000423575 OR8I2Q8N0Y5 310 aa9.08□□□□□ -0.96
LINC00539-202ENST00000423575 OR2G3Q8NGZ4 309 aa9.08□□□□□ -0.96
LINC00539-202ENST00000423575 GATAD1Q8WUU5 269 aa9.08□□□□□ -0.96
LINC00539-202ENST00000423575 PRR25Q96S07 402 aa9.08□□□□□ -0.96
LINC00539-202ENST00000423575 PFDN5Q99471 154 aa9.08□□□□□ -0.96
LINC00539-202ENST00000423575 SPAG8Q99932 426 aaPredicted RBP9.08□□□□□ -0.96
LINC00539-202ENST00000423575 ZNF471Q9BX82 626 aaPredicted RBP9.08□□□□□ -0.96
LINC00539-202ENST00000423575 MEGF8Q7Z7M0 2845 aa9.07□□□□□ -0.96
LINC00539-202ENST00000423575 SORL1Q92673 2214 aa9.07□□□□□ -0.96
LINC00539-202ENST00000423575 TRAV5A0A0B4J249 113 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms