RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 SLC35E4Q6ICL7 350 aa10.52□□□□□ -0.73
PTPRN-202ENST00000409251 H0YJW9 148 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 PEX7O00628 323 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 IGKV1-16P04430 117 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 HSPE1P61604 102 aaKnown RBP10.51□□□□□ -0.73
PTPRN-202ENST00000409251 HBBP68871 147 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 ZBTB34Q8NCN2 500 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 OR10AG1Q8NH19 301 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 TMEM186Q96B77 213 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 MBNL3Q9NUK0 354 aaKnown RBP10.51□□□□□ -0.73
PTPRN-202ENST00000409251 TET2Q6N021 2002 aaPredicted RBP10.51□□□□□ -0.73
PTPRN-202ENST00000409251 MMP23AO75900 390 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 C10orf113Q5VZT2 155 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 PDPNQ86YL7 162 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 OR1L4Q8NGR5 311 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 ITLN1Q8WWA0 313 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 MALRD1Q5VYJ5 2156 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 A0A0G2JNJ9 132 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 SRSF7Q16629 238 aaKnown RBP eCLIP10.51□□□□□ -0.73
PTPRN-202ENST00000409251 NRN1LQ496H8 165 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 TMEM97Q5BJF2 176 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 OR2K2Q8NGT1 345 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 Q9UFV3 132 aa10.51□□□□□ -0.73
PTPRN-202ENST00000409251 ITPR1Q14643 2758 aa10.5□□□□□ -0.73
PTPRN-202ENST00000409251 GRNP28799 593 aaKnown RBP10.5□□□□□ -0.73
PTPRN-202ENST00000409251 DEFB125Q8N687 156 aa10.5□□□□□ -0.73
PTPRN-202ENST00000409251 C5orf17Q8NAS9 161 aa10.5□□□□□ -0.73
PTPRN-202ENST00000409251 LINC01560Q8TB33 94 aa10.5□□□□□ -0.73
PTPRN-202ENST00000409251 PLSCR4Q9NRQ2 329 aa10.5□□□□□ -0.73
PTPRN-202ENST00000409251 ARHGAP32A7KAX9 2087 aa10.5□□□□□ -0.73
PTPRN-202ENST00000409251 NOTCH2Q04721 2471 aa10.5□□□□□ -0.73
PTPRN-202ENST00000409251 TRAV9-1A0A075B6T8 112 aa10.5□□□□□ -0.73
PTPRN-202ENST00000409251 CIARTQ8N365 385 aaPredicted RBP10.5□□□□□ -0.73
PTPRN-202ENST00000409251 TIMM23BQ5SRD1 257 aa10.5□□□□□ -0.73
PTPRN-202ENST00000409251 Q8NA96 180 aa10.5□□□□□ -0.73
PTPRN-202ENST00000409251 UTP20O75691 2785 aaKnown RBP10.49□□□□□ -0.73
PTPRN-202ENST00000409251 FLNCQ14315 2725 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 K7ERJ3 54 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 IGKV3-15P01624 115 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 VDAC2P45880 294 aaPredicted RBP10.49□□□□□ -0.73
PTPRN-202ENST00000409251 ACP7Q6ZNF0 438 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 ZNF788Q6ZQV5 615 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 LINC00305Q7Z4B0 112 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 ZNF503Q96F45 646 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 AP5S1Q9NUS5 200 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 SAA2-SAA4A0A096LPE2 208 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 A0A0G2JLM5 398 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 SAA2P0DJI9 122 aaPredicted RBP10.49□□□□□ -0.73
PTPRN-202ENST00000409251 CACNG7P62955 275 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 KIR3DS1Q14943 382 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 MORN2Q502X0 79 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 SRSF12Q8WXF0 261 aaKnown RBP10.49□□□□□ -0.73
PTPRN-202ENST00000409251 CCL17Q92583 94 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 ST20Q9HBF5 79 aa10.49□□□□□ -0.73
PTPRN-202ENST00000409251 TRBV6-6A0A0A6YYG2 114 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 VWC2LB2RUY7 222 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 NCR2O95944 276 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 PPBPP02775 128 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 SLC25A15Q9Y619 301 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 S4R3C0 116 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 LRRK2Q5S007 2527 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 SMIM27A0A1W2PRY6 76 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 DLX1P56177 255 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 COX19Q49B96 90 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 WDR82Q6UXN9 313 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 Q71RC1 249 aaPredicted RBP10.48□□□□□ -0.73
PTPRN-202ENST00000409251 CD177Q8N6Q3 437 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 C1orf159Q96HA4 380 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 SSUH2Q9Y2M2 353 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.48□□□□□ -0.73
PTPRN-202ENST00000409251 LYNX1G3V0Z9 82 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 J3QW42 95 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 IGLV2-8P01709 118 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 LYNX1P0DP58 116 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 ZNF146Q15072 292 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 C1orf229Q6ZS94 237 aaPredicted RBP10.48□□□□□ -0.73
PTPRN-202ENST00000409251 HES4Q9HCC6 221 aa10.48□□□□□ -0.73
PTPRN-202ENST00000409251 PPIAL4CA0A0B4J2A2 164 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 CEACAM4O75871 244 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 PPIAL4GP0DN37 164 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 GOLT1AQ6ZVE7 132 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 H1FXQ92522 213 aaKnown RBP10.47□□□□□ -0.73
PTPRN-202ENST00000409251 GRAMD2BQ96HH9 432 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 HARBI1Q96MB7 349 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 SLC25A33Q9BSK2 321 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 RABAC1Q9UI14 185 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 A8MWL6 223 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 LY6HO94772 140 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 HIST1H1AQ02539 215 aaPredicted RBP10.47□□□□□ -0.73
PTPRN-202ENST00000409251 PAX2Q02962 417 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 CSPG4Q6UVK1 2322 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 FAM106CPP0CH98 169 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 LYZP61626 148 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 FAM106AQ4KMX7 169 aa10.47□□□□□ -0.73
PTPRN-202ENST00000409251 LINC00322Q6ZN03 302 aaPredicted RBP10.47□□□□□ -0.73
PTPRN-202ENST00000409251 MRPL27Q9P0M9 148 aaKnown RBP10.47□□□□□ -0.73
PTPRN-202ENST00000409251 A6NDN8 102 aa10.46□□□□□ -0.73
PTPRN-202ENST00000409251 C15orf61A6NNL5 157 aa10.46□□□□□ -0.73
PTPRN-202ENST00000409251 PRSS47A8MTI9 375 aa10.46□□□□□ -0.73
PTPRN-202ENST00000409251 NPIPB11E5RHQ5 1161 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms