RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 OR10G7Q8NGN6 311 aa13.82□□□□□ -0.2
SDC1-203ENST00000403076 VSIRQ9H7M9 311 aa13.82□□□□□ -0.2
SDC1-203ENST00000403076 COL6A5A8TX70 2615 aa13.82□□□□□ -0.2
SDC1-203ENST00000403076 ELOA3CA0A087WX78 387 aaPredicted RBP13.81□□□□□ -0.2
SDC1-203ENST00000403076 LGALS9O00182 355 aa13.81□□□□□ -0.2
SDC1-203ENST00000403076 TM4SF20Q53R12 229 aa13.81□□□□□ -0.2
SDC1-203ENST00000403076 TMEM41BQ5BJD5 291 aa13.81□□□□□ -0.2
SDC1-203ENST00000403076 PATE2Q6UY27 113 aa13.81□□□□□ -0.2
SDC1-203ENST00000403076 REC114Q7Z4M0 266 aa13.81□□□□□ -0.2
SDC1-203ENST00000403076 GATAD1Q8WUU5 269 aa13.81□□□□□ -0.2
SDC1-203ENST00000403076 PFDN2Q9UHV9 154 aa13.81□□□□□ -0.2
SDC1-203ENST00000403076 S100A7P31151 101 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 FAM122CQ6P4D5 195 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 TMEM37Q8WXS4 190 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 NARS2Q96I59 477 aaKnown RBP13.8□□□□□ -0.2
SDC1-203ENST00000403076 DAZ1Q9NQZ3 744 aaKnown RBP13.8□□□□□ -0.2
SDC1-203ENST00000403076 MRPL27Q9P0M9 148 aaKnown RBP13.8□□□□□ -0.2
SDC1-203ENST00000403076 PEMTQ9UBM1 199 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 IGHV3-49A0A0A0MS15 119 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 A0A1W2PPV4 95 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 UMAD1C9J7I0 102 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 K7EMT4 169 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 OVOL1O14753 267 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 FAM78BQ5VT40 261 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 TEX261Q6UWH6 196 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 LINC00305Q7Z4B0 112 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 UHRF2Q96PU4 802 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 RNF2Q99496 336 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 RPRMQ9NS64 109 aa13.8□□□□□ -0.2
SDC1-203ENST00000403076 TENM1Q9UKZ4 2725 aa13.79□□□□□ -0.2
SDC1-203ENST00000403076 WNK1Q9H4A3 2382 aa13.79□□□□□ -0.2
SDC1-203ENST00000403076 IGHV3OR16-13A0A075B7E8 117 aa13.79□□□□□ -0.2
SDC1-203ENST00000403076 IGHV3-74A0A0B4J1X5 117 aa13.79□□□□□ -0.2
SDC1-203ENST00000403076 M0QZ24 198 aa13.79□□□□□ -0.2
SDC1-203ENST00000403076 IFNA7P01567 189 aa13.79□□□□□ -0.2
SDC1-203ENST00000403076 RHOBP62745 196 aa13.79□□□□□ -0.2
SDC1-203ENST00000403076 FAM74A1Q5RGS3 127 aa13.79□□□□□ -0.2
SDC1-203ENST00000403076 SLC25A39Q9BZJ4 359 aaPredicted RBP13.79□□□□□ -0.2
SDC1-203ENST00000403076 PLA2G2EQ9NZK7 142 aa13.79□□□□□ -0.2
SDC1-203ENST00000403076 A8MWP6 167 aa13.78□□□□□ -0.2
SDC1-203ENST00000403076 OR9G4Q8NGQ1 327 aa13.78□□□□□ -0.2
SDC1-203ENST00000403076 FAM213BQ8TBF2 198 aa13.78□□□□□ -0.2
SDC1-203ENST00000403076 ACTR3CQ9C0K3 210 aaPredicted RBP13.78□□□□□ -0.2
SDC1-203ENST00000403076 IGHV7-4-1A0A0J9YVY3 117 aa13.77□□□□□ -0.21
SDC1-203ENST00000403076 CRYBB3P26998 211 aa13.77□□□□□ -0.21
SDC1-203ENST00000403076 CDC34P49427 236 aaPredicted RBP13.77□□□□□ -0.21
SDC1-203ENST00000403076 SULT1A2P50226 295 aa13.77□□□□□ -0.21
SDC1-203ENST00000403076 RAB5CP51148 216 aa13.77□□□□□ -0.21
SDC1-203ENST00000403076 RPP25LQ8N5L8 163 aaKnown RBP13.77□□□□□ -0.21
SDC1-203ENST00000403076 ZNF680Q8NEM1 530 aa13.77□□□□□ -0.21
SDC1-203ENST00000403076 SHANK2-AS3Q9BTD1 123 aa13.77□□□□□ -0.21
SDC1-203ENST00000403076 ELOVL1Q9BW60 279 aa13.77□□□□□ -0.21
SDC1-203ENST00000403076 MRPL32Q9BYC8 188 aaKnown RBP13.77□□□□□ -0.21
SDC1-203ENST00000403076 SLC25A22Q9H936 323 aa13.77□□□□□ -0.21
SDC1-203ENST00000403076 SEPSECSQ9HD40 501 aaKnown RBP13.77□□□□□ -0.21
SDC1-203ENST00000403076 FUT9Q9Y231 359 aa13.77□□□□□ -0.21
SDC1-203ENST00000403076 IGHV3-66A0A0C4DH42 116 aa13.76□□□□□ -0.21
SDC1-203ENST00000403076 A0A1W2PS18 150 aa13.76□□□□□ -0.21
SDC1-203ENST00000403076 TMEM213A2RRL7 107 aa13.76□□□□□ -0.21
SDC1-203ENST00000403076 C2orf70A6NJV1 201 aa13.76□□□□□ -0.21
SDC1-203ENST00000403076 ZNF98A6NK75 572 aa13.76□□□□□ -0.21
SDC1-203ENST00000403076 BMI1P35226 326 aa13.76□□□□□ -0.21
SDC1-203ENST00000403076 SPATA31B1PQ5VZV4 182 aa13.76□□□□□ -0.21
SDC1-203ENST00000403076 GRAMD2BQ96HH9 432 aa13.76□□□□□ -0.21
SDC1-203ENST00000403076 SCRT1Q9BWW7 348 aa13.76□□□□□ -0.21
SDC1-203ENST00000403076 SMPXQ9UHP9 88 aa13.76□□□□□ -0.21
SDC1-203ENST00000403076 STAB1Q9NY15 2570 aa13.76□□□□□ -0.21
SDC1-203ENST00000403076 H3BRN7 92 aa13.75□□□□□ -0.21
SDC1-203ENST00000403076 APOHP02749 345 aaPredicted RBP13.75□□□□□ -0.21
SDC1-203ENST00000403076 FHITP49789 147 aa13.75□□□□□ -0.21
SDC1-203ENST00000403076 LEMD1Q68G75 181 aa13.75□□□□□ -0.21
SDC1-203ENST00000403076 MIR17HGQ75NE6 70 aa13.75□□□□□ -0.21
SDC1-203ENST00000403076 LINC00482Q8N8I6 264 aa13.75□□□□□ -0.21
SDC1-203ENST00000403076 RNF141Q8WVD5 230 aa13.75□□□□□ -0.21
SDC1-203ENST00000403076 MARC2Q969Z3 335 aa13.75□□□□□ -0.21
SDC1-203ENST00000403076 RHPN1-AS1Q9BWJ2 59 aa13.75□□□□□ -0.21
SDC1-203ENST00000403076 TMEM231Q9H6L2 316 aa13.75□□□□□ -0.21
SDC1-203ENST00000403076 UBQLN2Q9UHD9 624 aa13.75□□□□□ -0.21
SDC1-203ENST00000403076 RNF24Q9Y225 148 aa13.75□□□□□ -0.21
SDC1-203ENST00000403076 TRAV5A0A0B4J249 113 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 HMGB3O15347 200 aaKnown RBP13.74□□□□□ -0.21
SDC1-203ENST00000403076 EIF3GO75821 320 aaKnown RBP eCLIP13.74□□□□□ -0.21
SDC1-203ENST00000403076 FOLR2P14207 255 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 EDN2P20800 178 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 CBLN1P23435 193 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 DPPA3Q6W0C5 159 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 OR8I2Q8N0Y5 310 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 RAB24Q969Q5 203 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 TECRQ9NZ01 308 aaKnown RBP13.74□□□□□ -0.21
SDC1-203ENST00000403076 U3KQE9 123 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 CTXND1A0A1B0GTU2 59 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 ZNF705EA8MWA4 302 aaPredicted RBP13.74□□□□□ -0.21
SDC1-203ENST00000403076 SEC14L6B5MCN3 397 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 BUB3O43684 328 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 C8orf88P0DMB2 117 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 TAS2R45P59539 299 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 IFITM2Q01629 132 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 MORN5Q5VZ52 161 aa13.74□□□□□ -0.21
SDC1-203ENST00000403076 CHEK1O14757 476 aa13.73□□□□□ -0.21
SDC1-203ENST00000403076 CSN3P07498 182 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms