RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 HBG2P69892 147 aa16.13■□□□□ 0.17
CLN3-207ENST00000395653 C1orf194Q5T5A4 169 aa16.13■□□□□ 0.17
CLN3-207ENST00000395653 SIGLEC15Q6ZMC9 328 aa16.13■□□□□ 0.17
CLN3-207ENST00000395653 STPG3Q8N7X2 389 aa16.13■□□□□ 0.17
CLN3-207ENST00000395653 ZMAT4Q9H898 229 aa16.13■□□□□ 0.17
CLN3-207ENST00000395653 OR5AC2Q9NZP5 309 aa16.13■□□□□ 0.17
CLN3-207ENST00000395653 U3KQK5 164 aa16.13■□□□□ 0.17
CLN3-207ENST00000395653 H0YIZ8 118 aa16.12■□□□□ 0.17
CLN3-207ENST00000395653 K7EQG2 157 aa16.12■□□□□ 0.17
CLN3-207ENST00000395653 VWC2Q2TAL6 325 aa16.12■□□□□ 0.17
CLN3-207ENST00000395653 DCANP1Q8TF63 244 aa16.12■□□□□ 0.17
CLN3-207ENST00000395653 PPP1R14BQ96C90 147 aa16.12■□□□□ 0.17
CLN3-207ENST00000395653 UQCC1Q9NVA1 299 aa16.12■□□□□ 0.17
CLN3-207ENST00000395653 FBXL17Q9UF56 701 aa16.12■□□□□ 0.17
CLN3-207ENST00000395653 HUWE1Q7Z6Z7 4374 aaKnown RBP16.12■□□□□ 0.17
CLN3-207ENST00000395653 LOC102724200A0A096LPH7 203 aaPredicted RBP16.11■□□□□ 0.17
CLN3-207ENST00000395653 PET100P0DJ07 73 aa16.11■□□□□ 0.17
CLN3-207ENST00000395653 ORM2P19652 201 aa16.11■□□□□ 0.17
CLN3-207ENST00000395653 S100A7P31151 101 aa16.11■□□□□ 0.17
CLN3-207ENST00000395653 PLP1P60201 277 aa16.11■□□□□ 0.17
CLN3-207ENST00000395653 GGTLC1Q9BX51 225 aa16.11■□□□□ 0.17
CLN3-207ENST00000395653 SLC25A31Q9H0C2 315 aa16.11■□□□□ 0.17
CLN3-207ENST00000395653 AGPAT2O15120 278 aa16.11■□□□□ 0.17
CLN3-207ENST00000395653 LINC00869P0C866 280 aa16.11■□□□□ 0.17
CLN3-207ENST00000395653 ATP6V1FQ16864 119 aa16.11■□□□□ 0.17
CLN3-207ENST00000395653 ZNF546Q86UE3 836 aa16.11■□□□□ 0.17
CLN3-207ENST00000395653 OR1B1Q8NGR6 318 aa16.11■□□□□ 0.17
CLN3-207ENST00000395653 SPATA25Q9BR10 227 aa16.11■□□□□ 0.17
CLN3-207ENST00000395653 TMEM147Q9BVK8 224 aa16.11■□□□□ 0.17
CLN3-207ENST00000395653 NRN1Q9NPD7 142 aa16.11■□□□□ 0.17
CLN3-207ENST00000395653 MPC2O95563 127 aa16.1■□□□□ 0.17
CLN3-207ENST00000395653 CXCL3P19876 107 aa16.1■□□□□ 0.17
CLN3-207ENST00000395653 OXA1LQ15070 435 aa16.1■□□□□ 0.17
CLN3-207ENST00000395653 APRG1Q8IVJ8 170 aa16.1■□□□□ 0.17
CLN3-207ENST00000395653 FAM24BQ8N5W8 94 aa16.1■□□□□ 0.17
CLN3-207ENST00000395653 MGST2Q99735 147 aa16.1■□□□□ 0.17
CLN3-207ENST00000395653 MED28Q9H204 178 aa16.1■□□□□ 0.17
CLN3-207ENST00000395653 WDR83OSQ9Y284 106 aa16.1■□□□□ 0.17
CLN3-207ENST00000395653 STAB2Q8WWQ8 2551 aa16.09■□□□□ 0.17
CLN3-207ENST00000395653 EWSR1Q01844 656 aaKnown RBP eCLIP16.09■□□□□ 0.17
CLN3-207ENST00000395653 PXDC1Q5TGL8 231 aa16.09■□□□□ 0.17
CLN3-207ENST00000395653 OR8I2Q8N0Y5 310 aa16.09■□□□□ 0.17
CLN3-207ENST00000395653 RCHY1Q96PM5 261 aa16.09■□□□□ 0.17
CLN3-207ENST00000395653 RNF126Q9BV68 326 aa16.09■□□□□ 0.17
CLN3-207ENST00000395653 ZNF98A6NK75 572 aa16.08■□□□□ 0.16
CLN3-207ENST00000395653 HYPMO75409 117 aa16.08■□□□□ 0.16
CLN3-207ENST00000395653 DEFB131AP59861 70 aa16.08■□□□□ 0.16
CLN3-207ENST00000395653 RAP2BP61225 183 aa16.08■□□□□ 0.16
CLN3-207ENST00000395653 BAXQ07812 192 aa16.08■□□□□ 0.16
CLN3-207ENST00000395653 RAB31Q13636 194 aa16.08■□□□□ 0.16
CLN3-207ENST00000395653 SEPSECSQ9HD40 501 aaKnown RBP16.08■□□□□ 0.16
CLN3-207ENST00000395653 DOK5Q9P104 306 aa16.08■□□□□ 0.16
CLN3-207ENST00000395653 HIGD1AQ9Y241 93 aa16.08■□□□□ 0.16
CLN3-207ENST00000395653 CAMLGP49069 296 aa16.07■□□□□ 0.16
CLN3-207ENST00000395653 NHLH2Q02577 135 aa16.07■□□□□ 0.16
CLN3-207ENST00000395653 FCN2Q15485 313 aa16.07■□□□□ 0.16
CLN3-207ENST00000395653 ZNF124Q15973 351 aa16.07■□□□□ 0.16
CLN3-207ENST00000395653 S100A7AQ86SG5 101 aa16.07■□□□□ 0.16
CLN3-207ENST00000395653 OR11H7Q8NGC8 314 aa16.07■□□□□ 0.16
CLN3-207ENST00000395653 SLC25A39Q9BZJ4 359 aaPredicted RBP16.07■□□□□ 0.16
CLN3-207ENST00000395653 TENM3Q9P273 2699 aa16.06■□□□□ 0.16
CLN3-207ENST00000395653 UBE2L5PA0A1B0GUS4 154 aa16.06■□□□□ 0.16
CLN3-207ENST00000395653 H3BRN7 92 aa16.06■□□□□ 0.16
CLN3-207ENST00000395653 APOC4P55056 127 aa16.06■□□□□ 0.16
CLN3-207ENST00000395653 OR5C1Q8NGR4 320 aa16.06■□□□□ 0.16
CLN3-207ENST00000395653 GPR82Q96P67 336 aa16.06■□□□□ 0.16
CLN3-207ENST00000395653 SHANK2-AS3Q9BTD1 123 aa16.06■□□□□ 0.16
CLN3-207ENST00000395653 ARL6Q9H0F7 186 aa16.06■□□□□ 0.16
CLN3-207ENST00000395653 SLC25A22Q9H936 323 aa16.06■□□□□ 0.16
CLN3-207ENST00000395653 OR5G3P0C626 314 aa16.05■□□□□ 0.16
CLN3-207ENST00000395653 ZNF688P0C7X2 276 aa16.05■□□□□ 0.16
CLN3-207ENST00000395653 SLC25A32Q9H2D1 315 aa16.05■□□□□ 0.16
CLN3-207ENST00000395653 KIR2DL5BA0A0G2JN68 375 aa16.04■□□□□ 0.16
CLN3-207ENST00000395653 KIR2DL5BA0A0G2JPC4 375 aa16.04■□□□□ 0.16
CLN3-207ENST00000395653 GALR1P47211 349 aa16.04■□□□□ 0.16
CLN3-207ENST00000395653 SNRPD3P62318 126 aaKnown RBP16.04■□□□□ 0.16
CLN3-207ENST00000395653 LEMD1Q68G75 181 aa16.04■□□□□ 0.16
CLN3-207ENST00000395653 KIR2DL5AQ8N109 375 aa16.04■□□□□ 0.16
CLN3-207ENST00000395653 KIR2DL5BQ8NHK3 375 aa16.04■□□□□ 0.16
CLN3-207ENST00000395653 CHAC2Q8WUX2 184 aa16.04■□□□□ 0.16
CLN3-207ENST00000395653 SCRT1Q9BWW7 348 aa16.04■□□□□ 0.16
CLN3-207ENST00000395653 ARV1Q9H2C2 271 aa16.04■□□□□ 0.16
CLN3-207ENST00000395653 MBD2Q9UBB5 411 aa16.04■□□□□ 0.16
CLN3-207ENST00000395653 MPDU1O75352 247 aa16.03■□□□□ 0.16
CLN3-207ENST00000395653 LYL1P12980 280 aa16.03■□□□□ 0.16
CLN3-207ENST00000395653 PATE2Q6UY27 113 aa16.03■□□□□ 0.16
CLN3-207ENST00000395653 ASB13Q8WXK3 278 aa16.03■□□□□ 0.16
CLN3-207ENST00000395653 RNF24Q9Y225 148 aa16.03■□□□□ 0.16
CLN3-207ENST00000395653 NBEAL2Q6ZNJ1 2754 aa16.03■□□□□ 0.16
CLN3-207ENST00000395653 UBE2CO00762 179 aa16.02■□□□□ 0.16
CLN3-207ENST00000395653 RPL35AP18077 110 aaKnown RBP16.02■□□□□ 0.16
CLN3-207ENST00000395653 RPL29P47914 159 aaKnown RBP16.02■□□□□ 0.16
CLN3-207ENST00000395653 PRR20EP86478 221 aa16.02■□□□□ 0.16
CLN3-207ENST00000395653 PRR20CP86479 221 aa16.02■□□□□ 0.16
CLN3-207ENST00000395653 PRR20DP86480 221 aa16.02■□□□□ 0.16
CLN3-207ENST00000395653 PRR20BP86481 221 aa16.02■□□□□ 0.16
CLN3-207ENST00000395653 PRR20AP86496 221 aa16.02■□□□□ 0.16
CLN3-207ENST00000395653 OPCMLQ14982 345 aa16.02■□□□□ 0.16
CLN3-207ENST00000395653 PSMG4Q5JS54 123 aa16.02■□□□□ 0.16
CLN3-207ENST00000395653 SAMD13Q5VXD3 122 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms