RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CAMLGP49069 296 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 S100A7AQ86SG5 101 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 AKAP14Q86UN6 197 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 LYPD6BQ8NI32 183 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 TMEM37Q8WXS4 190 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 ZNF355PQ9NSJ1 428 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 SLC39A9Q9NUM3 307 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 CLEC5AQ9NY25 188 aa5.26□□□□□ -1.57
LIMA1-202ENST00000394943 PUS1Q9Y606 427 aaKnown RBP eCLIP5.26□□□□□ -1.57
LIMA1-202ENST00000394943 HUWE1Q7Z6Z7 4374 aaKnown RBP5.25□□□□□ -1.57
LIMA1-202ENST00000394943 A0A1B0GVG6 124 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 K7EQG2 157 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 SCGB1D2O95969 90 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 GP9P14770 177 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 S100A10P60903 97 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 BTNL8Q6UX41 500 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 OR1L4Q8NGR5 311 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 SAT2Q96F10 170 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-202ENST00000394943 PHYHIPLQ96FC7 376 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 PFDN5Q99471 154 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 SYNJ2BPP57105 145 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 PDE6HQ13956 83 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 LCN12Q6JVE5 192 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 DPF1Q92782 380 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 RABAC1Q9UI14 185 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 TRAV1-1A0A0B4J248 108 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 SPATA31B1PQ5VZV4 182 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 GNPNAT1Q96EK6 184 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-202ENST00000394943 METTL26Q96S19 204 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 ARPC5LQ9BPX5 153 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 SLC25A39Q9BZJ4 359 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-202ENST00000394943 PLA2G2EQ9NZK7 142 aa5.25□□□□□ -1.57
LIMA1-202ENST00000394943 NUDT19A8MXV4 375 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 C17orf112F2Z3M2 114 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 H3BP45 60 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 PF4P02776 101 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 CD33P20138 364 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 GUK1Q16774 197 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 IGHV3-23P01764 117 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 MBP02144 154 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 APOHP02749 345 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-202ENST00000394943 CAV2P51636 162 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 AP2S1P53680 142 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-202ENST00000394943 TM4SF20Q53R12 229 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 LYPD1Q8N2G4 141 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 MBD3L1Q8WWY6 194 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 ST8SIA2Q92186 375 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 ZNF503Q96F45 646 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 FAM19A4Q96LR4 140 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 SLC25A2Q9BXI2 301 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 HELTA6NFD8 242 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 CST7O76096 145 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 EDN2P20800 178 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 NPPCP23582 126 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 PSMB3P49720 205 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 RAB31Q13636 194 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 TMUB2Q71RG4 321 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 PFDN2Q9UHV9 154 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 PXMP4Q9Y6I8 212 aa5.24□□□□□ -1.57
LIMA1-202ENST00000394943 ZNF98A6NK75 572 aa5.23□□□□□ -1.57
LIMA1-202ENST00000394943 FGF7P21781 194 aa5.23□□□□□ -1.57
LIMA1-202ENST00000394943 INO80EQ8NBZ0 244 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-202ENST00000394943 ODF3Q96PU9 254 aa5.23□□□□□ -1.57
LIMA1-202ENST00000394943 RHPN1-AS1Q9BWJ2 59 aa5.23□□□□□ -1.57
LIMA1-202ENST00000394943 DNAJC4Q9NNZ3 241 aa5.23□□□□□ -1.57
LIMA1-202ENST00000394943 PRKDCP78527 4128 aaKnown RBP5.23□□□□□ -1.57
LIMA1-202ENST00000394943 HYPMO75409 117 aa5.23□□□□□ -1.57
LIMA1-202ENST00000394943 IGLL1P15814 213 aa5.23□□□□□ -1.57
LIMA1-202ENST00000394943 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.23□□□□□ -1.57
LIMA1-202ENST00000394943 COX8CQ7Z4L0 72 aa5.23□□□□□ -1.57
LIMA1-202ENST00000394943 APRG1Q8IVJ8 170 aa5.23□□□□□ -1.57
LIMA1-202ENST00000394943 MFFQ9GZY8 342 aa5.23□□□□□ -1.57
LIMA1-202ENST00000394943 FUT9Q9Y231 359 aa5.23□□□□□ -1.57
LIMA1-202ENST00000394943 HIGD1AQ9Y241 93 aa5.23□□□□□ -1.57
LIMA1-202ENST00000394943 TRAV8-2A0A0B4J237 113 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 TRBV7-9A0A0J9YWB2 115 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 TRBV6-1A0A0K0K1D8 114 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 A0A1W2PRX2 142 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 IL4P05112 153 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 ACY3Q96HD9 319 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 DUX3Q96PT4 197 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 SLC25A32Q9H2D1 315 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 UBE2L5PA0A1B0GUS4 154 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 ZFP92A6NM28 416 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 STAG3L2P0CL84 134 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 STAG3L3P0CL85 134 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 M6PRP20645 277 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 CD300EQ496F6 205 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-202ENST00000394943 HIST2H2BDQ6DRA6 164 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 STXBP6Q8NFX7 210 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 TCEAL7Q9BRU2 100 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 HRH4Q9H3N8 390 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 VWFP04275 2813 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 IGHV3-21A0A0B4J1V1 117 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 UMAD1C9J7I0 102 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 G3V4G9 280 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 ATF4P18848 351 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-202ENST00000394943 ATP6V0CP27449 155 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 RAB5CP51148 216 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 B2MP61769 119 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms