RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 FOXI3A8MTJ6 420 aaPredicted RBP6.64□□□□□ -1.35
LIMS1-203ENST00000393310 CRXO43186 299 aaPredicted RBP6.64□□□□□ -1.35
LIMS1-203ENST00000393310 HRCT1Q6UXD1 115 aa6.64□□□□□ -1.35
LIMS1-203ENST00000393310 PPDPFLQ8WWR9 84 aa6.64□□□□□ -1.35
LIMS1-203ENST00000393310 MUC21A0A0G2JKD1 596 aa6.64□□□□□ -1.35
LIMS1-203ENST00000393310 MUC21A0A140T8X8 626 aa6.64□□□□□ -1.35
LIMS1-203ENST00000393310 H3BRM9 83 aa6.64□□□□□ -1.35
LIMS1-203ENST00000393310 SRIP30626 198 aa6.64□□□□□ -1.35
LIMS1-203ENST00000393310 ACTL10Q5JWF8 245 aa6.64□□□□□ -1.35
LIMS1-203ENST00000393310 MUC21Q5SSG8 566 aa6.64□□□□□ -1.35
LIMS1-203ENST00000393310 VMO1Q7Z5L0 202 aa6.64□□□□□ -1.35
LIMS1-203ENST00000393310 ADAD2Q8NCV1 583 aaKnown RBP6.64□□□□□ -1.35
LIMS1-203ENST00000393310 DERL3Q96Q80 235 aa6.64□□□□□ -1.35
LIMS1-203ENST00000393310 DOCK4Q8N1I0 1966 aa6.64□□□□□ -1.35
LIMS1-203ENST00000393310 A0A0B4J2E0 115 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 A0A1B0GX12 115 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 NPIPB11E5RHQ5 1161 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 IGLC2P0DOY2 106 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 IGLC3P0DOY3 106 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 RPL7P18124 248 aaKnown RBP6.63□□□□□ -1.35
LIMS1-203ENST00000393310 KLRD1Q13241 179 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 CDK5R1Q15078 307 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 FAM19A5Q7Z5A7 132 aaPredicted RBP6.63□□□□□ -1.35
LIMS1-203ENST00000393310 MRPL30Q8TCC3 161 aaKnown RBP6.63□□□□□ -1.35
LIMS1-203ENST00000393310 CACNG5Q9UF02 275 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 RPUSD1Q9UJJ7 312 aaKnown RBP6.63□□□□□ -1.35
LIMS1-203ENST00000393310 TNRC6BQ9UPQ9 1833 aaKnown RBP6.63□□□□□ -1.35
LIMS1-203ENST00000393310 HYPMO75409 117 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 HLA-DQB1P01920 261 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 ELANEP08246 267 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 C10orf128Q5T292 105 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 GCSAMQ8N6F7 178 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 WNK2Q9Y3S1 2297 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 HEATR1Q9H583 2144 aaKnown RBP6.63□□□□□ -1.35
LIMS1-203ENST00000393310 GRIFINA4D1Z8 144 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 TMEM212A6NML5 194 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 PRSS46E5RG02 174 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 G3V2L1 256 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 MS4A18H0YCH9 400 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 TNFRSF13BO14836 293 aaPredicted RBP6.63□□□□□ -1.35
LIMS1-203ENST00000393310 MLNRO43193 412 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 FCGR3BO75015 233 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 RPS27LQ71UM5 84 aaKnown RBP6.63□□□□□ -1.35
LIMS1-203ENST00000393310 C18orf15Q96N68 181 aa6.63□□□□□ -1.35
LIMS1-203ENST00000393310 IGHV3-64DA0A0J9YX35 117 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 OR2A4O95047 310 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 HSPB1P04792 205 aaKnown RBP6.62□□□□□ -1.35
LIMS1-203ENST00000393310 LINC00869P0C866 280 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 PATE4P0C8F1 98 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 IGLC1P0CG04 106 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 RHOGP84095 191 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 ZNF816Q0VGE8 651 aaPredicted RBP6.62□□□□□ -1.35
LIMS1-203ENST00000393310 TMEM255AQ5JRV8 349 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 FAM159AQ6UWV7 190 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 OR2A7Q96R45 310 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 TRAV2A0A0B4J234 112 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 A0A1B0GW64 132 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 MYOD1P15172 320 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 LGALS3P17931 250 aaKnown RBP6.62□□□□□ -1.35
LIMS1-203ENST00000393310 WIPF2Q8TF74 440 aaPredicted RBP6.62□□□□□ -1.35
LIMS1-203ENST00000393310 TMEM54Q969K7 222 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 DPH3P1Q9H4G8 78 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 CUBNO60494 3623 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 FREM3P0C091 2139 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 TRBV24-1A0A075B6N3 115 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 TRAV13-1A0A0B4J241 112 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 IGLV1-44P01699 117 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 PPIFP30405 207 aaKnown RBP6.62□□□□□ -1.35
LIMS1-203ENST00000393310 RPL8P62917 257 aaKnown RBP6.62□□□□□ -1.35
LIMS1-203ENST00000393310 DNM1P46Q6ZS02 220 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 PRSS45Q7RTY3 260 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 Q96M85 177 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 OR2W1Q9Y3N9 320 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 SELENOKQ9Y6D0 94 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 DMXL1Q9Y485 3027 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 FAM236DA0A1B0GTK5 79 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 ARRDC5A6NEK1 342 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 PRSS29PA6NIE9 313 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 H3BTX0 84 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 FAM236CP0DP71 79 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 ECSCRQ19T08 205 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 SCGB1D4Q6XE38 83 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 PELI1Q96FA3 418 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 CCDC140Q96MF4 163 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 NMNAT3Q96T66 252 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 SIGLEC9Q9Y336 463 aa6.62□□□□□ -1.35
LIMS1-203ENST00000393310 UNC79Q9P2D8 2635 aa6.61□□□□□ -1.35
LIMS1-203ENST00000393310 NYNRINQ9P2P1 1898 aaKnown RBP6.61□□□□□ -1.35
LIMS1-203ENST00000393310 TEX22C9J3V5 150 aa6.61□□□□□ -1.35
LIMS1-203ENST00000393310 H3BP45 60 aa6.61□□□□□ -1.35
LIMS1-203ENST00000393310 REG1AP05451 166 aa6.61□□□□□ -1.35
LIMS1-203ENST00000393310 HGFACQ04756 655 aa6.61□□□□□ -1.35
LIMS1-203ENST00000393310 FAM240AA0A1B0GVK7 77 aa6.61□□□□□ -1.35
LIMS1-203ENST00000393310 CHEK1O14757 476 aa6.61□□□□□ -1.35
LIMS1-203ENST00000393310 SUB1P53999 127 aaKnown RBP eCLIP6.61□□□□□ -1.355e-7■■■■■ 33
LIMS1-203ENST00000393310 PSMG4Q5JS54 123 aa6.61□□□□□ -1.35
LIMS1-203ENST00000393310 ZCCHC24Q8N2G6 241 aaKnown RBP6.61□□□□□ -1.35
LIMS1-203ENST00000393310 C2orf50Q96LR7 162 aa6.61□□□□□ -1.35
LIMS1-203ENST00000393310 IL36GQ9NZH8 169 aa6.61□□□□□ -1.35
LIMS1-203ENST00000393310 ANKRD36A6QL64 1941 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms