RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 RBPJQ06330 500 aa7.98□□□□□ -1.13
COL17A1-203ENST00000393211 C12orf54Q6X4T0 127 aa7.98□□□□□ -1.13
COL17A1-203ENST00000393211 C22orf34Q6ZV56 151 aa7.98□□□□□ -1.13
COL17A1-203ENST00000393211 SPATA12Q7Z6I5 190 aa7.98□□□□□ -1.13
COL17A1-203ENST00000393211 DEFB124Q8NES8 71 aa7.98□□□□□ -1.13
COL17A1-203ENST00000393211 PMCHL2Q9BQD1 86 aa7.98□□□□□ -1.13
COL17A1-203ENST00000393211 MAP1LC3CQ9BXW4 147 aa7.98□□□□□ -1.13
COL17A1-203ENST00000393211 SIGLEC9Q9Y336 463 aa7.98□□□□□ -1.13
COL17A1-203ENST00000393211 IGHV2-70DA0A0C4DH43 119 aa7.97□□□□□ -1.13
COL17A1-203ENST00000393211 K7EQM0 130 aa7.97□□□□□ -1.13
COL17A1-203ENST00000393211 ENSAO43768 121 aaKnown RBP7.97□□□□□ -1.13
COL17A1-203ENST00000393211 IGHV3-48P01763 117 aa7.97□□□□□ -1.13
COL17A1-203ENST00000393211 APOHP02749 345 aaPredicted RBP7.97□□□□□ -1.13
COL17A1-203ENST00000393211 RBP4P02753 201 aa7.97□□□□□ -1.13
COL17A1-203ENST00000393211 RIGQ13278 110 aa7.97□□□□□ -1.13
COL17A1-203ENST00000393211 HCP5Q6MZN7 132 aa7.97□□□□□ -1.13
COL17A1-203ENST00000393211 SLC25A34Q6PIV7 304 aa7.97□□□□□ -1.13
COL17A1-203ENST00000393211 S100A7AQ86SG5 101 aa7.97□□□□□ -1.13
COL17A1-203ENST00000393211 TMEM75Q8N9X5 138 aa7.97□□□□□ -1.13
COL17A1-203ENST00000393211 TPSG1Q9NRR2 321 aa7.97□□□□□ -1.13
COL17A1-203ENST00000393211 CLEC5AQ9NY25 188 aa7.97□□□□□ -1.13
COL17A1-203ENST00000393211 ZNF835Q9Y2P0 537 aa7.97□□□□□ -1.13
COL17A1-203ENST00000393211 TRAV30A0A087WSZ9 112 aa7.96□□□□□ -1.13
COL17A1-203ENST00000393211 A0A1B0GUT8 65 aa7.96□□□□□ -1.13
COL17A1-203ENST00000393211 SPAARA0A1B0GVQ0 90 aa7.96□□□□□ -1.13
COL17A1-203ENST00000393211 IGLV2-11P01706 119 aa7.96□□□□□ -1.13
COL17A1-203ENST00000393211 FAM87AP0C7U9 286 aa7.96□□□□□ -1.13
COL17A1-203ENST00000393211 IGLC1P0CG04 106 aa7.96□□□□□ -1.13
COL17A1-203ENST00000393211 UNQ5815/PRO19632Q6UWF5 114 aa7.96□□□□□ -1.13
COL17A1-203ENST00000393211 LYPD2Q6UXB3 125 aa7.96□□□□□ -1.13
COL17A1-203ENST00000393211 KIR3DL3Q8N743 410 aa7.96□□□□□ -1.13
COL17A1-203ENST00000393211 RITA1Q96K30 269 aa7.96□□□□□ -1.13
COL17A1-203ENST00000393211 SCNM1Q9BWG6 230 aa7.96□□□□□ -1.13
COL17A1-203ENST00000393211 SLC25A39Q9BZJ4 359 aaPredicted RBP7.96□□□□□ -1.13
COL17A1-203ENST00000393211 GSX1Q9H4S2 264 aaPredicted RBP7.96□□□□□ -1.13
COL17A1-203ENST00000393211 CTSZQ9UBR2 303 aa7.96□□□□□ -1.13
COL17A1-203ENST00000393211 RPH3ALQ9UNE2 315 aa7.96□□□□□ -1.13
COL17A1-203ENST00000393211 TEX22C9J3V5 150 aa7.96□□□□□ -1.14
COL17A1-203ENST00000393211 IGLV1-47P01700 117 aa7.96□□□□□ -1.14
COL17A1-203ENST00000393211 PSG1P11464 419 aa7.96□□□□□ -1.14
COL17A1-203ENST00000393211 BSPH1Q075Z2 132 aa7.96□□□□□ -1.14
COL17A1-203ENST00000393211 FBLN7Q53RD9 439 aa7.96□□□□□ -1.14
COL17A1-203ENST00000393211 ASPHD1Q5U4P2 390 aa7.96□□□□□ -1.14
COL17A1-203ENST00000393211 PPP1R27Q86WC6 154 aa7.96□□□□□ -1.14
COL17A1-203ENST00000393211 BPIFA4PQ86YQ2 179 aa7.96□□□□□ -1.14
COL17A1-203ENST00000393211 WFDC8Q8IUA0 241 aa7.96□□□□□ -1.14
COL17A1-203ENST00000393211 CCL17Q92583 94 aa7.96□□□□□ -1.14
COL17A1-203ENST00000393211 DPF1Q92782 380 aa7.96□□□□□ -1.14
COL17A1-203ENST00000393211 RNASE6Q93091 150 aaKnown RBP7.96□□□□□ -1.14
COL17A1-203ENST00000393211 NGBQ9NPG2 151 aa7.96□□□□□ -1.14
COL17A1-203ENST00000393211 JKAMPQ9P055 326 aa7.96□□□□□ -1.14
COL17A1-203ENST00000393211 TTC28Q96AY4 2481 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 CADP27708 2225 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 FREM2Q5SZK8 3169 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 GPR179Q6PRD1 2367 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 IGHV1-3A0A0C4DH29 117 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 I3L2K1 104 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 K7EM74 188 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 PRRG2O14669 202 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 THBDP07204 575 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 HTR1DP28221 377 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 RHOGP84095 191 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 LINC01545Q5VT33 79 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 RUSC1-AS1Q66K80 236 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 ARL6IP6Q8N6S5 226 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 SGK494Q96LW2 274 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 RASL11BQ9BPW5 248 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 SHANK2-AS3Q9BTD1 123 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 SCRT2Q9NQ03 307 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 INSIG2Q9Y5U4 225 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 FRYLO94915 3013 aa7.95□□□□□ -1.14
COL17A1-203ENST00000393211 TRBV19A0A075B6N1 114 aa7.94□□□□□ -1.14
COL17A1-203ENST00000393211 A0A0G2JNJ9 132 aa7.94□□□□□ -1.14
COL17A1-203ENST00000393211 SERTM2A0A1B0GWG4 89 aa7.94□□□□□ -1.14
COL17A1-203ENST00000393211 BUB1B-PAK6H3BSN5 160 aa7.94□□□□□ -1.14
COL17A1-203ENST00000393211 OVOL3O00110 214 aa7.94□□□□□ -1.14
COL17A1-203ENST00000393211 CSN1S1P47710 185 aa7.94□□□□□ -1.14
COL17A1-203ENST00000393211 LYZP61626 148 aa7.94□□□□□ -1.14
COL17A1-203ENST00000393211 HIST1H1AQ02539 215 aaPredicted RBP7.94□□□□□ -1.14
COL17A1-203ENST00000393211 ZNF493Q6ZR52 646 aa7.94□□□□□ -1.14
COL17A1-203ENST00000393211 GOLT1AQ6ZVE7 132 aa7.94□□□□□ -1.14
COL17A1-203ENST00000393211 PRNTQ86SH4 94 aa7.94□□□□□ -1.14
COL17A1-203ENST00000393211 DEFB125Q8N687 156 aa7.94□□□□□ -1.14
COL17A1-203ENST00000393211 NEU4Q8WWR8 484 aaPredicted RBP7.94□□□□□ -1.14
COL17A1-203ENST00000393211 Q9UFV3 132 aa7.94□□□□□ -1.14
COL17A1-203ENST00000393211 RALYQ9UKM9 306 aaKnown RBP7.94□□□□□ -1.14
COL17A1-203ENST00000393211 URB1O60287 2271 aaKnown RBP7.94□□□□□ -1.14
COL17A1-203ENST00000393211 FBLL1A6NHQ2 334 aaKnown RBP7.93□□□□□ -1.14
COL17A1-203ENST00000393211 SH2D7A6NKC9 451 aaPredicted RBP7.93□□□□□ -1.14
COL17A1-203ENST00000393211 H3BRN7 92 aa7.93□□□□□ -1.14
COL17A1-203ENST00000393211 PDE6HQ13956 83 aa7.93□□□□□ -1.14
COL17A1-203ENST00000393211 BVES-AS1Q5T3Y7 98 aa7.93□□□□□ -1.14
COL17A1-203ENST00000393211 CIARTQ8N365 385 aaPredicted RBP7.93□□□□□ -1.14
COL17A1-203ENST00000393211 SRSF12Q8WXF0 261 aaKnown RBP7.93□□□□□ -1.14
COL17A1-203ENST00000393211 DYNLRB1Q9NP97 96 aa7.93□□□□□ -1.14
COL17A1-203ENST00000393211 AP5S1Q9NUS5 200 aa7.93□□□□□ -1.14
COL17A1-203ENST00000393211 CD5LO43866 347 aa7.92□□□□□ -1.14
COL17A1-203ENST00000393211 IGKV1-17P01599 117 aa7.92□□□□□ -1.14
COL17A1-203ENST00000393211 CDKN1BP46527 198 aa7.92□□□□□ -1.14
COL17A1-203ENST00000393211 PSG3Q16557 428 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms