RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 HIST1H2BCP62807 126 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 HIST2H2BEQ16778 126 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 HIST1H2BHQ93079 126 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 HIST1H2BNQ99877 126 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 HIST1H2BMQ99879 126 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 UBE2CO00762 179 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 LY6DQ14210 128 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 ZNF474Q6S9Z5 364 aaPredicted RBP10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 ZCCHC24Q8N2G6 241 aaKnown RBP10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 ZNF48Q96MX3 618 aaPredicted RBP10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 SCRT1Q9BWW7 348 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 RNF114Q9Y508 228 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 CABIN1Q9Y6J0 2220 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 PSG3Q16557 428 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 EXOC3-AS1Q8N2X6 119 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 RPRMLQ8N4K4 120 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 LOC285556D6RIA3 1793 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 TMEM178BH3BS89 294 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 SH2D1AO60880 128 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 LYZL1Q6UWQ5 148 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 HEPN1Q6WQI6 88 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 GGTLC1Q9BX51 225 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 RPUSD1Q9UJJ7 312 aaKnown RBP10.52□□□□□ -0.72
CCDC88C-204ENST00000389857 EDA2RQ9HAV5 297 aa10.52□□□□□ -0.72
CCDC88C-204ENST00000389857 LINC00527Q9UJ94 153 aa10.52□□□□□ -0.72
CCDC88C-204ENST00000389857 IGKV1-9A0A0C4DH69 117 aa10.52□□□□□ -0.73
CCDC88C-204ENST00000389857 DLX4Q92988 240 aaPredicted RBP10.52□□□□□ -0.73
CCDC88C-204ENST00000389857 CSTL1Q9H114 145 aa10.52□□□□□ -0.73
CCDC88C-204ENST00000389857 WFDC1Q9HC57 220 aa10.52□□□□□ -0.73
CCDC88C-204ENST00000389857 PLSCR4Q9NRQ2 329 aa10.52□□□□□ -0.73
CCDC88C-204ENST00000389857 BRWD3Q6RI45 1802 aa10.52□□□□□ -0.73
CCDC88C-204ENST00000389857 ANAPC10Q9UM13 185 aa10.52□□□□□ -0.73
CCDC88C-204ENST00000389857 A0A0A6YYD4 124 aa10.52□□□□□ -0.73
CCDC88C-204ENST00000389857 LYPD1Q8N2G4 141 aa10.52□□□□□ -0.73
CCDC88C-204ENST00000389857 TMEM105Q8N8V8 129 aa10.52□□□□□ -0.73
CCDC88C-204ENST00000389857 SRSF3P84103 164 aaKnown RBP10.52□□□□□ -0.73
CCDC88C-204ENST00000389857 KLHL30-AS1Q8NEE0 82 aa10.52□□□□□ -0.73
CCDC88C-204ENST00000389857 TNFSF13O75888 250 aa10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 NCR2O95944 276 aa10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 FXYD7P58549 80 aa10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 Q5PR19 223 aa10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 PIP4P2Q8N4L2 257 aa10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 LCTP09848 1927 aa10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 SRRM5B3KS81 715 aa10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 RBMY1FQ15415 496 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 IGHV3-53P01767 116 aa10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 KLF17Q5JT82 389 aaPredicted RBP10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 A0A1B0GW64 132 aa10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 FCN3O75636 299 aa10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 KLRD1Q13241 179 aa10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 ZFP36L1Q07352 338 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 LCN12Q6JVE5 192 aa10.51□□□□□ -0.73
CCDC88C-204ENST00000389857 PRTN3P24158 256 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 BCL6BQ8N143 479 aaPredicted RBP10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 TIMM21Q9BVV7 248 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 BTCP35070 178 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 TCRAP04437 139 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 LINC01356Q8N9X3 169 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 BUB1B-PAK6H3BSN5 160 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 FGF16O43320 207 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 LOC105371267A0A1B0GV96 52 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 PINLYPA6NC86 204 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 H3BUX3 64 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 LY6G6FQ5SQ64 297 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 LCNL1Q6ZST4 164 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 SUPT4H1P63272 117 aaKnown RBP10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 C5orf64Q2M2E5 130 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 LHFPL4Q7Z7J7 247 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 HIST1H2BLQ99880 126 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 VSIRQ9H7M9 311 aa10.5□□□□□ -0.73
CCDC88C-204ENST00000389857 TRPM7Q96QT4 1865 aa10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 ATRAIDQ6UW56 229 aa10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 TRAV8-1A0A0A6YYK1 113 aa10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 ZNF319Q9P2F9 582 aa10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 TRAV1-1A0A0B4J248 108 aa10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 H0YJW9 148 aa10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 CRYGSP22914 178 aa10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 FOXF2Q12947 444 aa10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 C1orf159Q96HA4 380 aa10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 GUSBP1Q15486 140 aa10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 SRSF8Q9BRL6 282 aaKnown RBP10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 YLPM1P49750 1951 aaKnown RBP10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 NDUFS8O00217 210 aa10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 NDPQ00604 133 aa10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 LY96Q9Y6Y9 160 aa10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 SBF1O95248 1867 aa10.49□□□□□ -0.73
CCDC88C-204ENST00000389857 OCIAD2Q56VL3 154 aa10.48□□□□□ -0.73
CCDC88C-204ENST00000389857 TRBV24-1A0A075B6N3 115 aa10.48□□□□□ -0.73
CCDC88C-204ENST00000389857 J3QRE1 110 aa10.48□□□□□ -0.73
CCDC88C-204ENST00000389857 NUP35Q8NFH5 326 aa10.48□□□□□ -0.73
CCDC88C-204ENST00000389857 AGMATQ9BSE5 352 aa10.48□□□□□ -0.73
CCDC88C-204ENST00000389857 A0A0G2JMZ2 1700 aa10.48□□□□□ -0.73
CCDC88C-204ENST00000389857 LRRC37A2A6NM11 1700 aa10.48□□□□□ -0.73
CCDC88C-204ENST00000389857 CRIM1Q9NZV1 1036 aa10.48□□□□□ -0.73
CCDC88C-204ENST00000389857 SLC25A16P16260 332 aa10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 SPATA31B1PQ5VZV4 182 aa10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 PAQR4Q8N4S7 273 aaPredicted RBP10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 LY6G5BQ8NDX9 201 aa10.47□□□□□ -0.73
CCDC88C-204ENST00000389857 TRPT1Q86TN4 253 aaKnown RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms