RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 NOTCH3Q9UM47 2321 aa11.65□□□□□ -0.54
RTF1-201ENST00000389629 SPAARA0A1B0GVQ0 90 aa11.65□□□□□ -0.54
RTF1-201ENST00000389629 D6R8Y8 96 aa11.65□□□□□ -0.54
RTF1-201ENST00000389629 NDUFS8O00217 210 aa11.65□□□□□ -0.54
RTF1-201ENST00000389629 KLK10O43240 276 aa11.65□□□□□ -0.54
RTF1-201ENST00000389629 NEUROG1Q92886 237 aa11.65□□□□□ -0.54
RTF1-201ENST00000389629 FBXL15Q9H469 300 aa11.65□□□□□ -0.54
RTF1-201ENST00000389629 PPIFP30405 207 aaKnown RBP11.65□□□□□ -0.54
RTF1-201ENST00000389629 RIF1Q5UIP0 2472 aaKnown RBP11.65□□□□□ -0.54
RTF1-201ENST00000389629 IGLC7A0M8Q6 106 aa11.65□□□□□ -0.54
RTF1-201ENST00000389629 BVES-AS1Q5T3Y7 98 aa11.65□□□□□ -0.54
RTF1-201ENST00000389629 IGHV1-18A0A0C4DH31 117 aa11.65□□□□□ -0.55
RTF1-201ENST00000389629 C16orf97H3BN30 126 aa11.65□□□□□ -0.55
RTF1-201ENST00000389629 EVI2AP22794 236 aa11.65□□□□□ -0.55
RTF1-201ENST00000389629 ERVK11-1P61568 191 aa11.65□□□□□ -0.55
RTF1-201ENST00000389629 ZC2HC1AQ96GY0 325 aa11.65□□□□□ -0.55
RTF1-201ENST00000389629 EBLN2Q6P2I7 272 aa11.64□□□□□ -0.55
RTF1-201ENST00000389629 CENPVQ7Z7K6 275 aaPredicted RBP11.64□□□□□ -0.55
RTF1-201ENST00000389629 FAM90A1Q86YD7 464 aa11.64□□□□□ -0.55
RTF1-201ENST00000389629 IGHV2-70DA0A0C4DH43 119 aa11.64□□□□□ -0.55
RTF1-201ENST00000389629 K7EP13 123 aa11.64□□□□□ -0.55
RTF1-201ENST00000389629 GTSCR1Q86UQ5 136 aa11.64□□□□□ -0.55
RTF1-201ENST00000389629 BEX4Q9NWD9 120 aaPredicted RBP11.64□□□□□ -0.55
RTF1-201ENST00000389629 MMP23AO75900 390 aa11.64□□□□□ -0.55
RTF1-201ENST00000389629 IGHV3-23P01764 117 aa11.64□□□□□ -0.55
RTF1-201ENST00000389629 ASCL5Q7RTU5 278 aa11.64□□□□□ -0.55
RTF1-201ENST00000389629 C1orf162Q8NEQ5 155 aaPredicted RBP11.64□□□□□ -0.55
RTF1-201ENST00000389629 LTBP2Q14767 1821 aa11.64□□□□□ -0.55
RTF1-201ENST00000389629 IGKV1D-17A0A075B6S4 117 aa11.64□□□□□ -0.55
RTF1-201ENST00000389629 ECSCRQ19T08 205 aa11.64□□□□□ -0.55
RTF1-201ENST00000389629 TTC32Q5I0X7 151 aa11.64□□□□□ -0.55
RTF1-201ENST00000389629 PSG8Q9UQ74 426 aa11.64□□□□□ -0.55
RTF1-201ENST00000389629 EML5Q05BV3 1969 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 CEACAM3P40198 252 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 LGALS7P47929 136 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 TMEM78Q5T7P6 136 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 PRSS57Q6UWY2 283 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 ZCCHC24Q8N2G6 241 aaKnown RBP11.63□□□□□ -0.55
RTF1-201ENST00000389629 OR9G4Q8NGQ1 327 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 OTORQ9NRC9 128 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 LOC105371242A0A075B767 164 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 PPIAL4CA0A0B4J2A2 164 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 IGKV1-16P04430 117 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 PPIAL4GP0DN37 164 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 MTURNQ8N3F0 131 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 IGHV1-24A0A0C4DH33 117 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 TCRAP04437 139 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 VDAC2P45880 294 aaPredicted RBP11.63□□□□□ -0.55
RTF1-201ENST00000389629 RPS20P60866 119 aaKnown RBP11.63□□□□□ -0.55
RTF1-201ENST00000389629 PSG3Q16557 428 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 YLPM1P49750 1951 aaKnown RBP11.63□□□□□ -0.55
RTF1-201ENST00000389629 FAM27E3Q08E93 113 aa11.63□□□□□ -0.55
RTF1-201ENST00000389629 IFI27P40305 119 aaPredicted RBP11.62□□□□□ -0.55
RTF1-201ENST00000389629 ZNF329Q86UD4 541 aa11.62□□□□□ -0.55
RTF1-201ENST00000389629 ZNRD1Q9P1U0 126 aa11.62□□□□□ -0.55
RTF1-201ENST00000389629 ADAMTS9Q9P2N4 1935 aa11.62□□□□□ -0.55
RTF1-201ENST00000389629 TM4SF5O14894 197 aa11.62□□□□□ -0.55
RTF1-201ENST00000389629 SAP30O75446 220 aa11.62□□□□□ -0.55
RTF1-201ENST00000389629 CKS1BP61024 79 aa11.62□□□□□ -0.55
RTF1-201ENST00000389629 TMEM30BQ3MIR4 351 aa11.62□□□□□ -0.55
RTF1-201ENST00000389629 WNT2P09544 360 aa11.62□□□□□ -0.55
RTF1-201ENST00000389629 GAGE13Q4V321 117 aa11.62□□□□□ -0.55
RTF1-201ENST00000389629 IGHV3-49A0A0A0MS15 119 aa11.61□□□□□ -0.55
RTF1-201ENST00000389629 SMIM27A0A1W2PRY6 76 aa11.61□□□□□ -0.55
RTF1-201ENST00000389629 GOSR1O95249 250 aa11.61□□□□□ -0.55
RTF1-201ENST00000389629 PRSS2P07478 247 aa11.61□□□□□ -0.55
RTF1-201ENST00000389629 SMKR1H3BMG3 65 aa11.61□□□□□ -0.55
RTF1-201ENST00000389629 KRTAP27-1Q3LI81 207 aa11.61□□□□□ -0.55
RTF1-201ENST00000389629 Q6AWC8 147 aa11.61□□□□□ -0.55
RTF1-201ENST00000389629 ADAMTSL5Q6ZMM2 481 aa11.61□□□□□ -0.55
RTF1-201ENST00000389629 SLC25A48Q6ZT89 311 aaKnown RBP11.61□□□□□ -0.55
RTF1-201ENST00000389629 TMEM131Q92545 1883 aa11.61□□□□□ -0.55
RTF1-201ENST00000389629 A0A1B0GW15 77 aa11.61□□□□□ -0.55
RTF1-201ENST00000389629 IGHV3-66A0A0C4DH42 116 aa11.61□□□□□ -0.55
RTF1-201ENST00000389629 ARMS2P0C7Q2 107 aa11.61□□□□□ -0.55
RTF1-201ENST00000389629 C11orf52Q96A22 123 aa11.61□□□□□ -0.55
RTF1-201ENST00000389629 ZNF71Q9NQZ8 489 aaPredicted RBP11.61□□□□□ -0.55
RTF1-201ENST00000389629 RABAC1Q9UI14 185 aa11.61□□□□□ -0.55
RTF1-201ENST00000389629 MUC22E2RYF6 1773 aaPredicted RBP11.6□□□□□ -0.55
RTF1-201ENST00000389629 MFAP4P55083 255 aa11.6□□□□□ -0.55
RTF1-201ENST00000389629 LINC00312Q9Y6C7 94 aa11.6□□□□□ -0.55
RTF1-201ENST00000389629 PMS2P5A8MQ11 134 aa11.6□□□□□ -0.55
RTF1-201ENST00000389629 ZNF295-AS1Q8N0V1 137 aa11.6□□□□□ -0.55
RTF1-201ENST00000389629 LCNL1Q6ZST4 164 aa11.6□□□□□ -0.55
RTF1-201ENST00000389629 LINC00173Q6ZV60 143 aa11.6□□□□□ -0.55
RTF1-201ENST00000389629 RPUSD1Q9UJJ7 312 aaKnown RBP11.6□□□□□ -0.55
RTF1-201ENST00000389629 NPIPB5A8MRT5 1133 aa11.6□□□□□ -0.55
RTF1-201ENST00000389629 ATP5LO75964 103 aa11.6□□□□□ -0.55
RTF1-201ENST00000389629 FTH1P19P0C7X4 201 aa11.6□□□□□ -0.55
RTF1-201ENST00000389629 RNFT1Q5M7Z0 435 aa11.6□□□□□ -0.55
RTF1-201ENST00000389629 TMEM238C9JI98 176 aa11.59□□□□□ -0.55
RTF1-201ENST00000389629 DPM2O94777 84 aa11.59□□□□□ -0.55
RTF1-201ENST00000389629 RNASE2P10153 161 aaKnown RBP11.59□□□□□ -0.55
RTF1-201ENST00000389629 LYZL1Q6UWQ5 148 aa11.59□□□□□ -0.55
RTF1-201ENST00000389629 AMN1Q8IY45 258 aa11.59□□□□□ -0.55
RTF1-201ENST00000389629 VKORC1Q9BQB6 163 aa11.59□□□□□ -0.55
RTF1-201ENST00000389629 SMAD7O15105 426 aaKnown RBP11.59□□□□□ -0.55
RTF1-201ENST00000389629 IGLV2-14P01704 120 aa11.59□□□□□ -0.55
RTF1-201ENST00000389629 RPRMLQ8N4K4 120 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms