RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SSBP2P81877 361 aaPredicted RBP7.99□□□□□ -1.13
VPS53-202ENST00000389040 SRSF2Q01130 221 aaKnown RBP7.99□□□□□ -1.13
VPS53-202ENST00000389040 ETFRF1Q6IPR1 90 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 C12orf54Q6X4T0 127 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 PQLC2Q6ZP29 291 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 TMEM37Q8WXS4 190 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 ANAPC16Q96DE5 110 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 FAM210BQ96KR6 192 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 MRPL32Q9BYC8 188 aaKnown RBP7.99□□□□□ -1.13
VPS53-202ENST00000389040 FBXL15Q9H469 300 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 SERTAD4Q9NUC0 356 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 MRPL36Q9P0J6 103 aaKnown RBP7.99□□□□□ -1.13
VPS53-202ENST00000389040 TRBV24-1A0A075B6N3 115 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 IGKV1D-37A0A075B6S9 117 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 PSMB11A5LHX3 300 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 TEX22C9J3V5 150 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 H7BYZ3 331 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 IGHV3-48P01763 117 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 APELAP0DMC3 54 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 AKR1D1P51857 326 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 CRIP2P52943 208 aaPredicted RBP7.98□□□□□ -1.13
VPS53-202ENST00000389040 MFAP2P55001 183 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 SELENOTP62341 195 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 SLC35B1P78383 322 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 FBLN7Q53RD9 439 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 LINC01551Q86U37 167 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 OR1P1Q8NH06 330 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 ZNF503Q96F45 646 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 MISP3Q96FF7 219 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 UHRF2Q96PU4 802 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 RNF2Q99496 336 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 ZNF747Q9BV97 191 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 DNAJC4Q9NNZ3 241 aa7.98□□□□□ -1.13
VPS53-202ENST00000389040 CORTO00230 105 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 UBE2CO00762 179 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 COX7A2P2O60397 106 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 OR7C2O60412 319 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 CRYGCP07315 174 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 C8orf88P0DMB2 117 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 RPL35P42766 123 aaKnown RBP7.97□□□□□ -1.13
VPS53-202ENST00000389040 ZNF90Q03938 601 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 C19orf35Q6ZS72 473 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 OR1L4Q8NGR5 311 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 SRSF12Q8WXF0 261 aaKnown RBP7.97□□□□□ -1.13
VPS53-202ENST00000389040 C11orf52Q96A22 123 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 OR5B12Q96R08 314 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 PFDN5Q99471 154 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 MDFIQ99750 246 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 F11RQ9Y624 299 aaKnown RBP7.97□□□□□ -1.13
VPS53-202ENST00000389040 IGHV7-81A0A0B4J1V7 117 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 FCN1O00602 326 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 PFN1P07737 140 aaKnown RBP7.97□□□□□ -1.13
VPS53-202ENST00000389040 S100PP25815 95 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 GALR1P47211 349 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 CX3CL1P78423 397 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 SHISA2Q6UWI4 295 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 LINC00518Q8N0U6 118 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 C3orf56Q8N813 242 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 NECAP1Q8NC96 275 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 OR5T1Q8NG75 326 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 WFDC12Q8WWY7 111 aa7.97□□□□□ -1.13
VPS53-202ENST00000389040 SRSF8Q9BRL6 282 aaKnown RBP7.97□□□□□ -1.13
VPS53-202ENST00000389040 TRBV20OR9-2A0A075B6H5 130 aa7.96□□□□□ -1.13
VPS53-202ENST00000389040 TGOLN2O43493 480 aa7.96□□□□□ -1.13
VPS53-202ENST00000389040 C9orf152Q5JTZ5 239 aa7.96□□□□□ -1.13
VPS53-202ENST00000389040 C10orf113Q5VZT2 155 aa7.96□□□□□ -1.13
VPS53-202ENST00000389040 TMEM116Q8NCL8 245 aa7.96□□□□□ -1.13
VPS53-202ENST00000389040 OR4X1Q8NH49 305 aa7.96□□□□□ -1.13
VPS53-202ENST00000389040 SGMS2Q8NHU3 365 aa7.96□□□□□ -1.13
VPS53-202ENST00000389040 WIPF2Q8TF74 440 aaPredicted RBP7.96□□□□□ -1.13
VPS53-202ENST00000389040 FAM167A-AS1Q96KT0 104 aa7.96□□□□□ -1.13
VPS53-202ENST00000389040 SLC25A2Q9BXI2 301 aa7.96□□□□□ -1.13
VPS53-202ENST00000389040 AURKAIP1Q9NWT8 199 aaPredicted RBP7.96□□□□□ -1.13
VPS53-202ENST00000389040 PLXNB1O43157 2135 aa7.96□□□□□ -1.14
VPS53-202ENST00000389040 TRAV5A0A0B4J249 113 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 PGPEP1LA6NFU8 196 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 A6NJY4 79 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 CNIH1O95406 144 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 BRI3O95415 125 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 TRGC2P03986 189 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 OR10J4P0C629 311 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 FABP9Q0Z7S8 132 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 FXYD3Q14802 87 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 MORN5Q5VZ52 161 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 PATE2Q6UY27 113 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 Q6ZS46 218 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 TRGV9Q99603 122 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 PYGO2Q9BRQ0 406 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 ELOVL1Q9BW60 279 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 DMRT1Q9Y5R6 373 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 A0A1W2PRE2 83 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 PPP1R2P9O14990 202 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 UBE2L3P68036 154 aaKnown RBP7.95□□□□□ -1.14
VPS53-202ENST00000389040 TEX38Q6PEX7 206 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 KLHDC1Q8N7A1 406 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 OR5AU1Q8NGC0 362 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 OR4X2Q8NGF9 303 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 ARPC1AQ92747 370 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 HSPB9Q9BQS6 159 aa7.95□□□□□ -1.14
VPS53-202ENST00000389040 ZNF355PQ9NSJ1 428 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms