RNA–Protein interactions for RNA: ENST00000377298.8

CLSTN1-202, Transcript of calsyntenin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN1, Length 5,221 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-202ENST00000377298 HIST1H2BOP23527 126 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 HIST1H2BBP33778 126 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 HIST1H2BDP58876 126 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 HIST1H2BCP62807 126 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 HIST2H2BEQ16778 126 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 FBLN7Q53RD9 439 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 HIST1H2BHQ93079 126 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 HIST1H2BNQ99877 126 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 HIST1H2BMQ99879 126 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 PMCHL2Q9BQD1 86 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 DNLZQ5SXM8 178 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 UQCRFS1P47985 274 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 CTAG1AP78358 180 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 IGFL2Q6UWQ7 119 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 SMIM12Q96EX1 92 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 SCRT1Q9BWW7 348 aa14.56□□□□□ -0.08
CLSTN1-202ENST00000377298 E9PQ18 207 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 JOSD1Q15040 202 aaPredicted RBP14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 TMEM170BQ5T4T1 132 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 C9orf139Q6ZV77 190 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 PIP4P2Q8N4L2 257 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 OR5AN1Q8NGI8 311 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 C18orf15Q96N68 181 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 ZNF503-AS2A6NEH8 195 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 FNDC10F2Z333 226 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 IGKV1-16P04430 117 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 CFHR2P36980 270 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 RPL15P61313 204 aaKnown RBP14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 MRPS16Q9Y3D3 137 aaKnown RBP14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 RNF114Q9Y508 228 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 CD33P20138 364 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 NTF4P34130 210 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 GAGE10A6NGK3 116 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 TMEM50AO95807 157 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 OR10J3Q5JRS4 329 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 TMEM160Q9NX00 188 aa14.55□□□□□ -0.08
CLSTN1-202ENST00000377298 F2Z2F3 143 aa14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 RNASE2P10153 161 aaKnown RBP14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 LINC00205P59089 165 aa14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 ATOH7Q8N100 152 aa14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 PARD6GQ9BYG4 376 aaPredicted RBP14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 IGKV1-6A0A0C4DH72 117 aa14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 ERVK11-1P61568 191 aa14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 SRSF4Q08170 494 aaKnown RBP14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 ZNF562Q6V9R5 426 aa14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 RPP25LQ8N5L8 163 aaKnown RBP14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 SLX1AQ9BQ83 275 aa14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 TRGV4A0A0C4DH28 118 aa14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 PCNX2A6NKB5 2137 aa14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 C15orf62A8K5M9 175 aa14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 PPBPP02775 128 aa14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 RNASE1P07998 156 aaKnown RBP14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 TEX36Q5VZQ5 186 aa14.54□□□□□ -0.08
CLSTN1-202ENST00000377298 C1orf147Q96MC9 270 aaPredicted RBP14.53□□□□□ -0.08
CLSTN1-202ENST00000377298 ZFHX2Q9C0A1 2572 aaPredicted RBP14.53□□□□□ -0.08
CLSTN1-202ENST00000377298 SPATA31B1PQ5VZV4 182 aa14.53□□□□□ -0.08
CLSTN1-202ENST00000377298 SEPSECSQ9HD40 501 aaKnown RBP14.53□□□□□ -0.08
CLSTN1-202ENST00000377298 OR13C6PQ8NH95 151 aa14.53□□□□□ -0.08
CLSTN1-202ENST00000377298 ST20Q9HBF5 79 aa14.53□□□□□ -0.08
CLSTN1-202ENST00000377298 WT1P19544 449 aaPredicted RBP14.53□□□□□ -0.08
CLSTN1-202ENST00000377298 ZNF256Q9Y2P7 627 aaPredicted RBP14.53□□□□□ -0.08
CLSTN1-202ENST00000377298 RSPO1Q2MKA7 263 aaPredicted RBP14.52□□□□□ -0.08
CLSTN1-202ENST00000377298 WDR86Q86TI4 376 aa14.52□□□□□ -0.08
CLSTN1-202ENST00000377298 TSKUQ8WUA8 353 aa14.52□□□□□ -0.08
CLSTN1-202ENST00000377298 IGHV1-69DA0A0B4J2H0 117 aa14.52□□□□□ -0.08
CLSTN1-202ENST00000377298 IGHV2-70DA0A0C4DH43 119 aa14.52□□□□□ -0.08
CLSTN1-202ENST00000377298 A0A0G2JRQ6 117 aa14.52□□□□□ -0.08
CLSTN1-202ENST00000377298 IGHV1-69P01742 117 aa14.52□□□□□ -0.08
CLSTN1-202ENST00000377298 TMEM170AQ8WVE7 144 aa14.52□□□□□ -0.08
CLSTN1-202ENST00000377298 AGMATQ9BSE5 352 aa14.52□□□□□ -0.08
CLSTN1-202ENST00000377298 TP53BP1Q12888 1972 aaPredicted RBP14.52□□□□□ -0.08
CLSTN1-202ENST00000377298 H3BRM9 83 aa14.52□□□□□ -0.09
CLSTN1-202ENST00000377298 TOMM40O96008 361 aa14.52□□□□□ -0.09
CLSTN1-202ENST00000377298 NDUFAF3Q9BU61 184 aa14.52□□□□□ -0.09
CLSTN1-202ENST00000377298 ZNF329Q86UD4 541 aa14.52□□□□□ -0.09
CLSTN1-202ENST00000377298 LOXP28300 417 aaPredicted RBP14.51□□□□□ -0.09
CLSTN1-202ENST00000377298 Q6ZRM9 215 aa14.51□□□□□ -0.09
CLSTN1-202ENST00000377298 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.51□□□□□ -0.09
CLSTN1-202ENST00000377298 LOC107984156A0A0G2JMH3 177 aa14.51□□□□□ -0.09
CLSTN1-202ENST00000377298 A0A1B0GW64 132 aa14.51□□□□□ -0.09
CLSTN1-202ENST00000377298 ARL17AQ8IVW1 177 aa14.51□□□□□ -0.09
CLSTN1-202ENST00000377298 UBE2DNLQ8IWF7 75 aa14.51□□□□□ -0.09
CLSTN1-202ENST00000377298 MUC6Q6W4X9 2439 aa14.51□□□□□ -0.09
CLSTN1-202ENST00000377298 PGPEP1LA6NFU8 196 aa14.51□□□□□ -0.09
CLSTN1-202ENST00000377298 KIR3DL3Q8N743 410 aa14.51□□□□□ -0.09
CLSTN1-202ENST00000377298 KLHL30-AS1Q8NEE0 82 aa14.51□□□□□ -0.09
CLSTN1-202ENST00000377298 LYPD1Q8N2G4 141 aa14.5□□□□□ -0.09
CLSTN1-202ENST00000377298 MRAP2Q96G30 205 aa14.5□□□□□ -0.09
CLSTN1-202ENST00000377298 ANAPC10Q9UM13 185 aa14.5□□□□□ -0.09
CLSTN1-202ENST00000377298 HELZP42694 1942 aaKnown RBP14.5□□□□□ -0.09
CLSTN1-202ENST00000377298 NPIPB5A8MRT5 1133 aa14.5□□□□□ -0.09
CLSTN1-202ENST00000377298 TCRAP04437 139 aa14.5□□□□□ -0.09
CLSTN1-202ENST00000377298 DTX2Q86UW9 622 aa14.5□□□□□ -0.09
CLSTN1-202ENST00000377298 EXOC3-AS1Q8N2X6 119 aa14.5□□□□□ -0.09
CLSTN1-202ENST00000377298 RNF138Q8WVD3 245 aa14.5□□□□□ -0.09
CLSTN1-202ENST00000377298 PEF1Q9UBV8 284 aaKnown RBP14.5□□□□□ -0.09
CLSTN1-202ENST00000377298 FABP2P12104 132 aa14.5□□□□□ -0.09
CLSTN1-202ENST00000377298 PCP4P48539 62 aa14.5□□□□□ -0.09
CLSTN1-202ENST00000377298 CFAP161Q6P656 301 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 109.6 ms