RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 ATP6V1FQ16864 119 aa11.11□□□□□ -0.63
COL9A1-204ENST00000370496 VWC2Q2TAL6 325 aa11.11□□□□□ -0.63
COL9A1-204ENST00000370496 FAM90A2PQ658T7 463 aa11.11□□□□□ -0.63
COL9A1-204ENST00000370496 C16orf54Q6UWD8 224 aa11.11□□□□□ -0.63
COL9A1-204ENST00000370496 GLMPQ8WWB7 406 aa11.11□□□□□ -0.63
COL9A1-204ENST00000370496 MGST2Q99735 147 aa11.11□□□□□ -0.63
COL9A1-204ENST00000370496 MS4A6AQ9H2W1 248 aa11.11□□□□□ -0.63
COL9A1-204ENST00000370496 U3KQE9 123 aa11.11□□□□□ -0.63
COL9A1-204ENST00000370496 OR11H12B2RN74 326 aa11.1□□□□□ -0.63
COL9A1-204ENST00000370496 BUB3O43684 328 aa11.1□□□□□ -0.63
COL9A1-204ENST00000370496 FRMD6-AS1P0C7T7 363 aa11.1□□□□□ -0.63
COL9A1-204ENST00000370496 FGF7P21781 194 aa11.1□□□□□ -0.63
COL9A1-204ENST00000370496 CAMLGP49069 296 aa11.1□□□□□ -0.63
COL9A1-204ENST00000370496 RAP2BP61225 183 aa11.1□□□□□ -0.63
COL9A1-204ENST00000370496 FGL1Q08830 312 aa11.1□□□□□ -0.63
COL9A1-204ENST00000370496 SIGLEC15Q6ZMC9 328 aa11.1□□□□□ -0.63
COL9A1-204ENST00000370496 TMEM182Q6ZP80 229 aaPredicted RBP11.1□□□□□ -0.63
COL9A1-204ENST00000370496 WFDC3Q8IUB2 231 aa11.1□□□□□ -0.63
COL9A1-204ENST00000370496 B9D2Q9BPU9 175 aa11.1□□□□□ -0.63
COL9A1-204ENST00000370496 RNF126Q9BV68 326 aa11.1□□□□□ -0.63
COL9A1-204ENST00000370496 UBQLN2Q9UHD9 624 aa11.1□□□□□ -0.63
COL9A1-204ENST00000370496 SLC45A2Q9UMX9 530 aa11.1□□□□□ -0.63
COL9A1-204ENST00000370496 WDR83OSQ9Y284 106 aa11.1□□□□□ -0.63
COL9A1-204ENST00000370496 OR5G3P0C626 314 aa11.09□□□□□ -0.63
COL9A1-204ENST00000370496 RPL12P30050 165 aaKnown RBP11.09□□□□□ -0.63
COL9A1-204ENST00000370496 AP2S1P53680 142 aaPredicted RBP11.09□□□□□ -0.63
COL9A1-204ENST00000370496 DEFB125Q8N687 156 aa11.09□□□□□ -0.63
COL9A1-204ENST00000370496 ARL6Q9H0F7 186 aa11.09□□□□□ -0.63
COL9A1-204ENST00000370496 SRD5A3Q9H8P0 318 aa11.09□□□□□ -0.63
COL9A1-204ENST00000370496 FBXL17Q9UF56 701 aa11.09□□□□□ -0.63
COL9A1-204ENST00000370496 HIGD1AQ9Y241 93 aa11.09□□□□□ -0.63
COL9A1-204ENST00000370496 HSPB11Q9Y547 144 aa11.09□□□□□ -0.63
COL9A1-204ENST00000370496 HYPMO75409 117 aa11.08□□□□□ -0.64
COL9A1-204ENST00000370496 ODF3L2Q3SX64 289 aa11.08□□□□□ -0.64
COL9A1-204ENST00000370496 S100A7AQ86SG5 101 aa11.08□□□□□ -0.64
COL9A1-204ENST00000370496 GGTLC1Q9BX51 225 aa11.08□□□□□ -0.64
COL9A1-204ENST00000370496 SLC25A22Q9H936 323 aa11.08□□□□□ -0.64
COL9A1-204ENST00000370496 TRAV2A0A0B4J234 112 aa11.07□□□□□ -0.64
COL9A1-204ENST00000370496 COX7A2P2O60397 106 aa11.07□□□□□ -0.64
COL9A1-204ENST00000370496 MPDU1O75352 247 aa11.07□□□□□ -0.64
COL9A1-204ENST00000370496 LYL1P12980 280 aa11.07□□□□□ -0.64
COL9A1-204ENST00000370496 C1orf194Q5T5A4 169 aa11.07□□□□□ -0.64
COL9A1-204ENST00000370496 PXDC1Q5TGL8 231 aa11.07□□□□□ -0.64
COL9A1-204ENST00000370496 OR8I2Q8N0Y5 310 aa11.07□□□□□ -0.64
COL9A1-204ENST00000370496 STPG3Q8N7X2 389 aa11.07□□□□□ -0.64
COL9A1-204ENST00000370496 OR2T35Q8NGX2 323 aa11.07□□□□□ -0.64
COL9A1-204ENST00000370496 ATP5SQ99766 215 aa11.07□□□□□ -0.64
COL9A1-204ENST00000370496 SCRT1Q9BWW7 348 aa11.07□□□□□ -0.64
COL9A1-204ENST00000370496 SMIM3Q9BZL3 60 aa11.07□□□□□ -0.64
COL9A1-204ENST00000370496 NRN1Q9NPD7 142 aa11.07□□□□□ -0.64
COL9A1-204ENST00000370496 A8MZ25 164 aa11.06□□□□□ -0.64
COL9A1-204ENST00000370496 H3BRN7 92 aa11.06□□□□□ -0.64
COL9A1-204ENST00000370496 PLP1P60201 277 aa11.06□□□□□ -0.64
COL9A1-204ENST00000370496 OPCMLQ14982 345 aa11.06□□□□□ -0.64
COL9A1-204ENST00000370496 MIC13Q5XKP0 118 aa11.06□□□□□ -0.64
COL9A1-204ENST00000370496 Q6ZRG5 221 aa11.06□□□□□ -0.64
COL9A1-204ENST00000370496 NPCDR1Q9BY65 106 aa11.06□□□□□ -0.64
COL9A1-204ENST00000370496 SLC25A39Q9BZJ4 359 aaPredicted RBP11.06□□□□□ -0.64
COL9A1-204ENST00000370496 ARV1Q9H2C2 271 aa11.06□□□□□ -0.64
COL9A1-204ENST00000370496 MAP6D1Q9H9H5 199 aa11.06□□□□□ -0.64
COL9A1-204ENST00000370496 KCNIP2Q9NS61 270 aa11.06□□□□□ -0.64
COL9A1-204ENST00000370496 FXYD6-FXYD2A0A087WZ82 144 aa11.05□□□□□ -0.64
COL9A1-204ENST00000370496 ZNF98A6NK75 572 aa11.05□□□□□ -0.64
COL9A1-204ENST00000370496 GALR1P47211 349 aa11.05□□□□□ -0.64
COL9A1-204ENST00000370496 CMC4P56277 68 aaPredicted RBP11.05□□□□□ -0.64
COL9A1-204ENST00000370496 B2MP61769 119 aa11.05□□□□□ -0.64
COL9A1-204ENST00000370496 LEMD1Q68G75 181 aa11.05□□□□□ -0.64
COL9A1-204ENST00000370496 UHRF2Q96PU4 802 aa11.05□□□□□ -0.64
COL9A1-204ENST00000370496 ASCL2Q99929 193 aa11.05□□□□□ -0.64
COL9A1-204ENST00000370496 FAM110AQ9BQ89 295 aa11.05□□□□□ -0.64
COL9A1-204ENST00000370496 SHANK2-AS3Q9BTD1 123 aa11.05□□□□□ -0.64
COL9A1-204ENST00000370496 SLC25A32Q9H2D1 315 aa11.05□□□□□ -0.64
COL9A1-204ENST00000370496 C19orf73Q9NVV2 129 aa11.05□□□□□ -0.64
COL9A1-204ENST00000370496 PXMP4Q9Y6I8 212 aa11.05□□□□□ -0.64
COL9A1-204ENST00000370496 K7EQG2 157 aa11.04□□□□□ -0.64
COL9A1-204ENST00000370496 IFNA5P01569 189 aa11.04□□□□□ -0.64
COL9A1-204ENST00000370496 ZNF688P0C7X2 276 aa11.04□□□□□ -0.64
COL9A1-204ENST00000370496 APRG1Q8IVJ8 170 aa11.04□□□□□ -0.64
COL9A1-204ENST00000370496 FAM24BQ8N5W8 94 aa11.04□□□□□ -0.64
COL9A1-204ENST00000370496 ZNF709Q8N972 641 aa11.04□□□□□ -0.64
COL9A1-204ENST00000370496 OR1L4Q8NGR5 311 aa11.04□□□□□ -0.64
COL9A1-204ENST00000370496 DCANP1Q8TF63 244 aa11.04□□□□□ -0.64
COL9A1-204ENST00000370496 GPR82Q96P67 336 aa11.04□□□□□ -0.64
COL9A1-204ENST00000370496 PFDN5Q99471 154 aa11.04□□□□□ -0.64
COL9A1-204ENST00000370496 SLC39A9Q9NUM3 307 aa11.04□□□□□ -0.64
COL9A1-204ENST00000370496 RNF24Q9Y225 148 aa11.04□□□□□ -0.64
COL9A1-204ENST00000370496 ELOA3CA0A087WX78 387 aaPredicted RBP11.03□□□□□ -0.64
COL9A1-204ENST00000370496 RPL29P47914 159 aaKnown RBP11.03□□□□□ -0.64
COL9A1-204ENST00000370496 SNRPD3P62318 126 aaKnown RBP11.03□□□□□ -0.64
COL9A1-204ENST00000370496 PRR20EP86478 221 aa11.03□□□□□ -0.64
COL9A1-204ENST00000370496 PRR20CP86479 221 aa11.03□□□□□ -0.64
COL9A1-204ENST00000370496 PRR20DP86480 221 aa11.03□□□□□ -0.64
COL9A1-204ENST00000370496 PRR20BP86481 221 aa11.03□□□□□ -0.64
COL9A1-204ENST00000370496 PRR20AP86496 221 aa11.03□□□□□ -0.64
COL9A1-204ENST00000370496 Q5BKY6 102 aa11.03□□□□□ -0.64
COL9A1-204ENST00000370496 C10orf113Q5VZT2 155 aa11.03□□□□□ -0.64
COL9A1-204ENST00000370496 LINC00305Q7Z4B0 112 aa11.03□□□□□ -0.64
COL9A1-204ENST00000370496 INO80EQ8NBZ0 244 aaPredicted RBP11.03□□□□□ -0.64
COL9A1-204ENST00000370496 WDR61Q9GZS3 305 aaKnown RBP11.03□□□□□ -0.64
COL9A1-204ENST00000370496 C17orf112F2Z3M2 114 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms