RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 IGHV3OR16-10A0A075B7F0 116 aa16.08■□□□□ 0.17
CCDC88B-202ENST00000356786 LINC00473A8K010 186 aa16.08■□□□□ 0.17
CCDC88B-202ENST00000356786 SELLP14151 372 aa16.08■□□□□ 0.17
CCDC88B-202ENST00000356786 LINC00205P59089 165 aa16.08■□□□□ 0.17
CCDC88B-202ENST00000356786 APOBEC3AP31941 199 aaPredicted RBP16.08■□□□□ 0.16
CCDC88B-202ENST00000356786 C9orf106Q8NAJ2 232 aa16.08■□□□□ 0.16
CCDC88B-202ENST00000356786 H3BRM9 83 aa16.08■□□□□ 0.16
CCDC88B-202ENST00000356786 ZCCHC24Q8N2G6 241 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-202ENST00000356786 SLC50A1Q9BRV3 221 aa16.07■□□□□ 0.16
CCDC88B-202ENST00000356786 NBR2O15453 112 aa16.07■□□□□ 0.16
CCDC88B-202ENST00000356786 ZFAND6Q6FIF0 208 aa16.07■□□□□ 0.16
CCDC88B-202ENST00000356786 RPUSD1Q9UJJ7 312 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-202ENST00000356786 DOCK7Q96N67 2140 aa16.07■□□□□ 0.16
CCDC88B-202ENST00000356786 F2Z2F3 143 aa16.07■□□□□ 0.16
CCDC88B-202ENST00000356786 IGLC2P0DOY2 106 aa16.07■□□□□ 0.16
CCDC88B-202ENST00000356786 IGLC3P0DOY3 106 aa16.07■□□□□ 0.16
CCDC88B-202ENST00000356786 CD24P25063 80 aa16.07■□□□□ 0.16
CCDC88B-202ENST00000356786 LYZL1Q6UWQ5 148 aa16.07■□□□□ 0.16
CCDC88B-202ENST00000356786 LINC00479Q96M42 142 aa16.07■□□□□ 0.16
CCDC88B-202ENST00000356786 TRAV8-1A0A0A6YYK1 113 aa16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 TMPRSS3P57727 454 aa16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 DUX5Q96PT3 197 aa16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 TOMM7Q9P0U1 55 aa16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 TRBV6-6A0A0A6YYG2 114 aa16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 TRBV7-9A0A0J9YWB2 115 aa16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 CLPSP04118 112 aa16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 IFI27P40305 119 aaPredicted RBP16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 CFHR1Q03591 330 aa16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 Q6ZS49 121 aa16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 PRTN3P24158 256 aa16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 NUP37Q8NFH4 326 aa16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 ZC2HC1BQ5TFG8 222 aa16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 SCRT1Q9BWW7 348 aa16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 TMEM133Q9H2Q1 129 aa16.06■□□□□ 0.16
CCDC88B-202ENST00000356786 TRAV8-4A0A0B4J246 113 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 SRRM5B3KS81 715 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 MYOD1P15172 320 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 PLNP26678 52 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 SP9P0CG40 484 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 BSPH1Q075Z2 132 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 GGNQ86UU5 652 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 LINC01560Q8TB33 94 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 GLMPQ8WWB7 406 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 GPR179Q6PRD1 2367 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 ERG28Q9UKR5 140 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 PINLYPA6NC86 204 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 PSG3Q16557 428 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 LINC01559Q495D7 138 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 C20orf204Q6ZNR8 217 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 Q6ZWC4 215 aa16.05■□□□□ 0.16
CCDC88B-202ENST00000356786 PLAURQ03405 335 aa16.04■□□□□ 0.16
CCDC88B-202ENST00000356786 KLF17Q5JT82 389 aaPredicted RBP16.04■□□□□ 0.16
CCDC88B-202ENST00000356786 PLXNA3P51805 1871 aa16.04■□□□□ 0.16
CCDC88B-202ENST00000356786 C18orf32Q8TCD1 76 aa16.04■□□□□ 0.16
CCDC88B-202ENST00000356786 IGKV3D-20A0A0C4DH25 116 aa16.03■□□□□ 0.16
CCDC88B-202ENST00000356786 CD7P09564 240 aa16.03■□□□□ 0.16
CCDC88B-202ENST00000356786 LAGE3Q14657 143 aa16.03■□□□□ 0.16
CCDC88B-202ENST00000356786 RNF182Q8N6D2 247 aa16.03■□□□□ 0.16
CCDC88B-202ENST00000356786 C1orf147Q96MC9 270 aaPredicted RBP16.03■□□□□ 0.16
CCDC88B-202ENST00000356786 METRNQ9UJH8 293 aa16.03■□□□□ 0.16
CCDC88B-202ENST00000356786 IGKV2-40A0A087WW87 121 aaPredicted RBP16.03■□□□□ 0.16
CCDC88B-202ENST00000356786 IGKV2D-40P01614 121 aaPredicted RBP16.03■□□□□ 0.16
CCDC88B-202ENST00000356786 PAX1P15863 534 aa16.03■□□□□ 0.16
CCDC88B-202ENST00000356786 CNTFRP26992 372 aa16.02■□□□□ 0.16
CCDC88B-202ENST00000356786 CACNA1BQ00975 2339 aa16.02■□□□□ 0.16
CCDC88B-202ENST00000356786 MYO7BQ6PIF6 2116 aa16.02■□□□□ 0.16
CCDC88B-202ENST00000356786 STPG4Q8N801 248 aa16.02■□□□□ 0.16
CCDC88B-202ENST00000356786 SLC25A39Q9BZJ4 359 aaPredicted RBP16.02■□□□□ 0.16
CCDC88B-202ENST00000356786 TRAV21A0A0B4J279 112 aa16.02■□□□□ 0.16
CCDC88B-202ENST00000356786 E9PLN8 166 aa16.02■□□□□ 0.16
CCDC88B-202ENST00000356786 PAX9P55771 341 aa16.02■□□□□ 0.16
CCDC88B-202ENST00000356786 ADAMTSL5Q6ZMM2 481 aa16.02■□□□□ 0.15
CCDC88B-202ENST00000356786 SRCAPQ6ZRS2 3230 aa16.01■□□□□ 0.15
CCDC88B-202ENST00000356786 IGKV1-6A0A0C4DH72 117 aa16.01■□□□□ 0.15
CCDC88B-202ENST00000356786 FAM231BA6NCW3 169 aa16.01■□□□□ 0.15
CCDC88B-202ENST00000356786 Q6P435 159 aa16.01■□□□□ 0.15
CCDC88B-202ENST00000356786 ASCL4Q6XD76 172 aa16.01■□□□□ 0.15
CCDC88B-202ENST00000356786 IGHV3-11P01762 117 aa16.01■□□□□ 0.15
CCDC88B-202ENST00000356786 MLANAQ16655 118 aa16.01■□□□□ 0.15
CCDC88B-202ENST00000356786 DLX4Q92988 240 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-202ENST00000356786 DOCK8Q8NF50 2099 aa16.01■□□□□ 0.15
CCDC88B-202ENST00000356786 CSRP2Q16527 193 aa16.01■□□□□ 0.15
CCDC88B-202ENST00000356786 MED13LQ71F56 2210 aa16.01■□□□□ 0.15
CCDC88B-202ENST00000356786 IGHV3-64A0A075B6Q5 118 aa16.01■□□□□ 0.15
CCDC88B-202ENST00000356786 CDPF1Q6NVV7 123 aa16.01■□□□□ 0.15
CCDC88B-202ENST00000356786 VOPP1Q96AW1 172 aa16.01■□□□□ 0.15
CCDC88B-202ENST00000356786 TDGF1P13385 188 aa16■□□□□ 0.15
CCDC88B-202ENST00000356786 ZNF726P1Q15940 193 aa16■□□□□ 0.15
CCDC88B-202ENST00000356786 TMEM101Q96IK0 257 aa16■□□□□ 0.15
CCDC88B-202ENST00000356786 KLF2Q9Y5W3 355 aaPredicted RBP16■□□□□ 0.15
CCDC88B-202ENST00000356786 SMAD7O15105 426 aaKnown RBP16■□□□□ 0.15
CCDC88B-202ENST00000356786 PTPRDP23468 1912 aa16■□□□□ 0.15
CCDC88B-202ENST00000356786 PDLIM4P50479 330 aa16■□□□□ 0.15
CCDC88B-202ENST00000356786 HS3ST6Q96QI5 342 aa16■□□□□ 0.15
CCDC88B-202ENST00000356786 ITGB1BP1O14713 200 aa16■□□□□ 0.15
CCDC88B-202ENST00000356786 LIME1Q9H400 295 aa16■□□□□ 0.15
CCDC88B-202ENST00000356786 IGHV1-18A0A0C4DH31 117 aa15.99■□□□□ 0.15
CCDC88B-202ENST00000356786 A0A0U1RRA0 63 aa15.99■□□□□ 0.15
CCDC88B-202ENST00000356786 AMN1Q8IY45 258 aa15.99■□□□□ 0.15
CCDC88B-202ENST00000356786 CD177Q8N6Q3 437 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms