RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 CHTOPQ9Y3Y2 248 aaKnown RBP12.53□□□□□ -0.4
SHROOM1-201ENST00000319854 ITPR1Q14643 2758 aa12.52□□□□□ -0.4
SHROOM1-201ENST00000319854 MFAP2P55001 183 aa12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 RBPJQ06330 500 aa12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 RAB31Q13636 194 aa12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 BVES-AS1Q5T3Y7 98 aa12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 SMIM15Q7Z3B0 74 aa12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 IGF2BP2-AS1Q96M15 143 aa12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 ZNF355PQ9NSJ1 428 aa12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 CELSR1Q9NYQ6 3014 aa12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 PRR20EP86478 221 aa12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 PRR20CP86479 221 aa12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 PRR20DP86480 221 aa12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 PRR20BP86481 221 aa12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 PRR20AP86496 221 aa12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 COL25A1Q9BXS0 654 aaPredicted RBP12.52□□□□□ -0.41
SHROOM1-201ENST00000319854 OR4C46A6NHA9 309 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 FAM90A9PA6NNJ1 464 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 CCL21O00585 134 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 CIDEAO60543 219 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 SSBP2P81877 361 aaPredicted RBP12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 HCP5Q6MZN7 132 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 PIEZO1Q92508 2521 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 VWC2LB2RUY7 222 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 CD3EP07766 207 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 COX19Q49B96 90 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 A0A1W2PRD5 423 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 A0A1W2PRF3 423 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 A0A1W2PRM7 423 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 LOXP28300 417 aaPredicted RBP12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 PRCDQ00LT1 54 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 FAM120AOSQ5T036 256 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 NUP35Q8NFH5 326 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 NGBQ9NPG2 151 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 ARL2-SNX15V9GYD0 113 aa12.51□□□□□ -0.41
SHROOM1-201ENST00000319854 CAMPP49913 170 aa12.5□□□□□ -0.41
SHROOM1-201ENST00000319854 PPOXP50336 477 aa12.5□□□□□ -0.41
SHROOM1-201ENST00000319854 ZNF841Q6ZN19 808 aa12.5□□□□□ -0.41
SHROOM1-201ENST00000319854 CORO2AQ92828 525 aa12.5□□□□□ -0.41
SHROOM1-201ENST00000319854 TRAV8-6A0A0B4J262 113 aa12.5□□□□□ -0.41
SHROOM1-201ENST00000319854 CNTFRP26992 372 aa12.5□□□□□ -0.41
SHROOM1-201ENST00000319854 PSG9Q00887 426 aa12.5□□□□□ -0.41
SHROOM1-201ENST00000319854 NABP2Q9BQ15 211 aa12.5□□□□□ -0.41
SHROOM1-201ENST00000319854 TRAV5A0A0B4J249 113 aa12.49□□□□□ -0.41
SHROOM1-201ENST00000319854 CORTO00230 105 aa12.49□□□□□ -0.41
SHROOM1-201ENST00000319854 SAP30O75446 220 aa12.49□□□□□ -0.41
SHROOM1-201ENST00000319854 DEFB125Q8N687 156 aa12.49□□□□□ -0.41
SHROOM1-201ENST00000319854 PRB4P10163 310 aaPredicted RBP12.49□□□□□ -0.41
SHROOM1-201ENST00000319854 RIPPLY3P57055 190 aa12.49□□□□□ -0.41
SHROOM1-201ENST00000319854 TMEM70Q9BUB7 260 aa12.49□□□□□ -0.41
SHROOM1-201ENST00000319854 JKAMPQ9P055 326 aa12.49□□□□□ -0.41
SHROOM1-201ENST00000319854 GAGE12BA1L429 117 aa12.49□□□□□ -0.41
SHROOM1-201ENST00000319854 MORN5Q5VZ52 161 aa12.49□□□□□ -0.41
SHROOM1-201ENST00000319854 ZNF833PQ6ZTB9 187 aa12.49□□□□□ -0.41
SHROOM1-201ENST00000319854 ZNF430Q9H8G1 570 aaPredicted RBP12.49□□□□□ -0.41
SHROOM1-201ENST00000319854 ZNF835Q9Y2P0 537 aa12.49□□□□□ -0.41
SHROOM1-201ENST00000319854 TMEM238LA0A1B0GVL6 79 aa12.48□□□□□ -0.41
SHROOM1-201ENST00000319854 WT1-ASQ06250 92 aa12.48□□□□□ -0.41
SHROOM1-201ENST00000319854 KLF5Q13887 457 aaPredicted RBP12.48□□□□□ -0.41
SHROOM1-201ENST00000319854 MBD6Q96DN6 1003 aa12.48□□□□□ -0.41
SHROOM1-201ENST00000319854 CENPEQ02224 2701 aa12.47□□□□□ -0.41
SHROOM1-201ENST00000319854 A0A087X0K7 114 aa12.47□□□□□ -0.41
SHROOM1-201ENST00000319854 TMEM238C9JI98 176 aa12.47□□□□□ -0.41
SHROOM1-201ENST00000319854 RNASE2P10153 161 aaKnown RBP12.47□□□□□ -0.41
SHROOM1-201ENST00000319854 APOBEC3AP31941 199 aaPredicted RBP12.47□□□□□ -0.41
SHROOM1-201ENST00000319854 FOXA3P55318 350 aaPredicted RBP12.47□□□□□ -0.41
SHROOM1-201ENST00000319854 MEF2CQ06413 473 aaPredicted RBP12.47□□□□□ -0.41
SHROOM1-201ENST00000319854 HSBP1L1C9JCN9 74 aa12.47□□□□□ -0.41
SHROOM1-201ENST00000319854 ERHP84090 104 aaKnown RBP12.47□□□□□ -0.41
SHROOM1-201ENST00000319854 PRR27Q6MZM9 219 aa12.47□□□□□ -0.41
SHROOM1-201ENST00000319854 OR4C13Q8NGP0 309 aa12.47□□□□□ -0.41
SHROOM1-201ENST00000319854 NPIPB3Q92617 1050 aa12.47□□□□□ -0.41
SHROOM1-201ENST00000319854 TMEM167BQ9NRX6 74 aa12.47□□□□□ -0.41
SHROOM1-201ENST00000319854 OR1L8Q8NGR8 309 aa12.46□□□□□ -0.41
SHROOM1-201ENST00000319854 WIPF2Q8TF74 440 aaPredicted RBP12.46□□□□□ -0.41
SHROOM1-201ENST00000319854 NUDT11Q96G61 164 aa12.46□□□□□ -0.41
SHROOM1-201ENST00000319854 MEGF9Q9H1U4 602 aa12.46□□□□□ -0.41
SHROOM1-201ENST00000319854 CACNA1AO00555 2505 aa12.46□□□□□ -0.41
SHROOM1-201ENST00000319854 VPS13CQ709C8 3753 aa12.46□□□□□ -0.41
SHROOM1-201ENST00000319854 IGHV1-8P0DP01 117 aa12.46□□□□□ -0.41
SHROOM1-201ENST00000319854 SGK494Q96LW2 274 aa12.46□□□□□ -0.41
SHROOM1-201ENST00000319854 MRPL36Q9P0J6 103 aaKnown RBP12.46□□□□□ -0.41
SHROOM1-201ENST00000319854 RUSC1-AS1Q66K80 236 aa12.46□□□□□ -0.42
SHROOM1-201ENST00000319854 OR5AN1Q8NGI8 311 aa12.46□□□□□ -0.42
SHROOM1-201ENST00000319854 OSR1Q8TAX0 266 aaPredicted RBP12.46□□□□□ -0.42
SHROOM1-201ENST00000319854 VKORC1Q9BQB6 163 aa12.46□□□□□ -0.42
SHROOM1-201ENST00000319854 LINC00574Q9H8X3 128 aa12.46□□□□□ -0.42
SHROOM1-201ENST00000319854 MOSP00540 346 aa12.45□□□□□ -0.42
SHROOM1-201ENST00000319854 PMCHL2Q9BQD1 86 aa12.45□□□□□ -0.42
SHROOM1-201ENST00000319854 FNDC4Q9H6D8 234 aaPredicted RBP12.45□□□□□ -0.42
SHROOM1-201ENST00000319854 ST20Q9HBF5 79 aa12.45□□□□□ -0.42
SHROOM1-201ENST00000319854 ONECUT1Q9UBC0 465 aa12.45□□□□□ -0.42
SHROOM1-201ENST00000319854 SYS1-DBNDD2H3BUS1 97 aa12.45□□□□□ -0.42
SHROOM1-201ENST00000319854 RPS20P60866 119 aaKnown RBP12.45□□□□□ -0.42
SHROOM1-201ENST00000319854 SLC25A34Q6PIV7 304 aa12.45□□□□□ -0.42
SHROOM1-201ENST00000319854 ZFYVE26Q68DK2 2539 aa12.45□□□□□ -0.42
SHROOM1-201ENST00000319854 HIGD1CA8MV81 97 aa12.44□□□□□ -0.42
SHROOM1-201ENST00000319854 H3BTX0 84 aa12.44□□□□□ -0.42
SHROOM1-201ENST00000319854 SNAI2O43623 268 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms