RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TMEM208Q9BTX3 173 aa10.45□□□□□ -0.74
CCDC88B-201ENST00000301897 SLC35B3Q9H1N7 401 aa10.45□□□□□ -0.74
CCDC88B-201ENST00000301897 TMEM56-RWDD3S4R434 201 aa10.45□□□□□ -0.74
CCDC88B-201ENST00000301897 HSPG2P98160 4391 aa10.45□□□□□ -0.74
CCDC88B-201ENST00000301897 CRYM-AS1A6NIL9 109 aa10.44□□□□□ -0.74
CCDC88B-201ENST00000301897 ZNF182P17025 639 aaPredicted RBP10.44□□□□□ -0.74
CCDC88B-201ENST00000301897 B2MP61769 119 aa10.44□□□□□ -0.74
CCDC88B-201ENST00000301897 MRPS10P82664 201 aaKnown RBP10.44□□□□□ -0.74
CCDC88B-201ENST00000301897 OR8I2Q8N0Y5 310 aa10.44□□□□□ -0.74
CCDC88B-201ENST00000301897 DTD1Q8TEA8 209 aa10.44□□□□□ -0.74
CCDC88B-201ENST00000301897 SLC35E1Q96K37 410 aa10.44□□□□□ -0.74
CCDC88B-201ENST00000301897 IGF2BP2-AS1Q96M15 143 aa10.44□□□□□ -0.74
CCDC88B-201ENST00000301897 DOK5Q9P104 306 aa10.44□□□□□ -0.74
CCDC88B-201ENST00000301897 KCNIP3Q9Y2W7 256 aa10.44□□□□□ -0.74
CCDC88B-201ENST00000301897 A8MTW9 85 aa10.43□□□□□ -0.74
CCDC88B-201ENST00000301897 SNRPGP15A8MWD9 76 aa10.43□□□□□ -0.74
CCDC88B-201ENST00000301897 DISC1C4P0D8 188 aa10.43□□□□□ -0.74
CCDC88B-201ENST00000301897 GALR1P47211 349 aa10.43□□□□□ -0.74
CCDC88B-201ENST00000301897 CCR6P51684 374 aa10.43□□□□□ -0.74
CCDC88B-201ENST00000301897 DEFB1P60022 68 aa10.43□□□□□ -0.74
CCDC88B-201ENST00000301897 LYZP61626 148 aa10.43□□□□□ -0.74
CCDC88B-201ENST00000301897 CTF1Q16619 201 aa10.43□□□□□ -0.74
CCDC88B-201ENST00000301897 C6orf223Q8N319 242 aa10.43□□□□□ -0.74
CCDC88B-201ENST00000301897 HSPB7Q9UBY9 170 aa10.43□□□□□ -0.74
CCDC88B-201ENST00000301897 GPR132Q9UNW8 380 aa10.43□□□□□ -0.74
CCDC88B-201ENST00000301897 PIGBOS1A0A0B4J2F0 54 aa10.42□□□□□ -0.74
CCDC88B-201ENST00000301897 NBDYA0A0U1RRE5 68 aa10.42□□□□□ -0.74
CCDC88B-201ENST00000301897 CFDP00746 253 aaPredicted RBP10.42□□□□□ -0.74
CCDC88B-201ENST00000301897 S100A7P31151 101 aa10.42□□□□□ -0.74
CCDC88B-201ENST00000301897 TNP2Q05952 138 aa10.42□□□□□ -0.74
CCDC88B-201ENST00000301897 GAMTQ14353 236 aa10.42□□□□□ -0.74
CCDC88B-201ENST00000301897 SMCO1Q147U7 214 aa10.42□□□□□ -0.74
CCDC88B-201ENST00000301897 MAPKAPK5-AS1Q8N8E1 139 aa10.42□□□□□ -0.74
CCDC88B-201ENST00000301897 C16orf92Q96LL3 132 aa10.42□□□□□ -0.74
CCDC88B-201ENST00000301897 NAA50Q9GZZ1 169 aaKnown RBP10.42□□□□□ -0.74
CCDC88B-201ENST00000301897 DUSP14O95147 198 aaKnown RBP10.41□□□□□ -0.74
CCDC88B-201ENST00000301897 TSPOP30536 169 aa10.41□□□□□ -0.74
CCDC88B-201ENST00000301897 CCL18P55774 89 aa10.41□□□□□ -0.74
CCDC88B-201ENST00000301897 ZNF90Q03938 601 aa10.41□□□□□ -0.74
CCDC88B-201ENST00000301897 SCGB3A2Q96PL1 93 aa10.41□□□□□ -0.74
CCDC88B-201ENST00000301897 TRGV9Q99603 122 aa10.41□□□□□ -0.74
CCDC88B-201ENST00000301897 PRRT1Q99946 306 aa10.41□□□□□ -0.74
CCDC88B-201ENST00000301897 SLC45A2Q9UMX9 530 aa10.41□□□□□ -0.74
CCDC88B-201ENST00000301897 IGKV1D-37A0A075B6S9 117 aa10.4□□□□□ -0.74
CCDC88B-201ENST00000301897 A0A0B4J2A0 478 aa10.4□□□□□ -0.74
CCDC88B-201ENST00000301897 F6UB75 175 aa10.4□□□□□ -0.74
CCDC88B-201ENST00000301897 INSP01308 110 aa10.4□□□□□ -0.74
CCDC88B-201ENST00000301897 AKAIN1P0CW23 69 aa10.4□□□□□ -0.74
CCDC88B-201ENST00000301897 SRPXP78539 464 aa10.4□□□□□ -0.74
CCDC88B-201ENST00000301897 GGNBP1Q5YKI7 109 aa10.4□□□□□ -0.74
CCDC88B-201ENST00000301897 FAAP20Q6NZ36 180 aa10.4□□□□□ -0.74
CCDC88B-201ENST00000301897 ZNRF2Q8NHG8 242 aa10.4□□□□□ -0.74
CCDC88B-201ENST00000301897 GPR82Q96P67 336 aa10.4□□□□□ -0.74
CCDC88B-201ENST00000301897 MIXL1Q9H2W2 232 aa10.4□□□□□ -0.74
CCDC88B-201ENST00000301897 RBKSQ9H477 322 aa10.4□□□□□ -0.74
CCDC88B-201ENST00000301897 SHPKQ9UHJ6 478 aa10.4□□□□□ -0.74
CCDC88B-201ENST00000301897 RAB11AP62491 216 aa10.39□□□□□ -0.75
CCDC88B-201ENST00000301897 AMTNQ6UX39 209 aa10.39□□□□□ -0.75
CCDC88B-201ENST00000301897 OR4C16Q8NGL9 310 aa10.39□□□□□ -0.75
CCDC88B-201ENST00000301897 OR4D5Q8NGN0 318 aa10.39□□□□□ -0.75
CCDC88B-201ENST00000301897 MRPS26Q9BYN8 205 aaKnown RBP10.39□□□□□ -0.75
CCDC88B-201ENST00000301897 F5H768 121 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 NUDT3O95989 172 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 ATP5G1P05496 136 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 DEFB130BP0DP73 79 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 DEFB130AP0DP74 79 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 AKR1C4P17516 323 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 ATP5G3P48201 142 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 OR2F1Q13607 317 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 GPR141Q7Z602 305 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 Q8N1X5 172 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 OR1B1Q8NGR6 318 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 OR1S1Q8NH92 325 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 SMIM4Q8WVI0 70 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 RSG1Q9BU20 258 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 RABL2AQ9UBK7 228 aaPredicted RBP10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 RABL2BQ9UNT1 228 aa10.38□□□□□ -0.75
CCDC88B-201ENST00000301897 ZNF705GA8MUZ8 300 aaPredicted RBP10.37□□□□□ -0.75
CCDC88B-201ENST00000301897 CTDSPLO15194 276 aa10.37□□□□□ -0.75
CCDC88B-201ENST00000301897 ANXA3P12429 323 aa10.37□□□□□ -0.75
CCDC88B-201ENST00000301897 TMEM256Q8N2U0 113 aa10.37□□□□□ -0.75
CCDC88B-201ENST00000301897 THAP8Q8NA92 274 aa10.37□□□□□ -0.75
CCDC88B-201ENST00000301897 OR11H7Q8NGC8 314 aa10.37□□□□□ -0.75
CCDC88B-201ENST00000301897 C20orf173Q96LM9 149 aa10.37□□□□□ -0.75
CCDC88B-201ENST00000301897 LRP1BQ9NZR2 4599 aa10.37□□□□□ -0.75
CCDC88B-201ENST00000301897 SCP2D1Q9UJQ7 156 aa10.37□□□□□ -0.75
CCDC88B-201ENST00000301897 CBY3A6NI87 242 aa10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 ZNF98A6NK75 572 aa10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 CTDSP2O14595 271 aa10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 RGS5O15539 181 aa10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 CNN1P51911 297 aaKnown RBP10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 RPP30P78346 268 aaKnown RBP10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 CLINT1Q14677 625 aa10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 SPINK13Q1W4C9 94 aa10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 TTC32Q5I0X7 151 aa10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 LYZL2Q7Z4W2 148 aa10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 CLVS1Q8IUQ0 354 aaPredicted RBP10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 BPIFCQ8NFQ6 507 aa10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 OR51S1Q8NGJ8 323 aa10.36□□□□□ -0.75
CCDC88B-201ENST00000301897 SLC25A32Q9H2D1 315 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms