RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 MORN2Q502X0 79 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 ATP5L2Q7Z4Y8 100 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 NLRC5Q86WI3 1866 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 PRCDQ00LT1 54 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 C9orf106Q8NAJ2 232 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 FAM90A2PQ658T7 463 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 DENND4CQ5VZ89 1909 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 TRAV41A0A0B4J266 112 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 TSKUQ8WUA8 353 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 OSTCQ9NRP0 149 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 ZNHIT1O43257 154 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 ZXDCQ2QGD7 858 aaPredicted RBP7.75□□□□□ -1.17
CUX1-201ENST00000292535 PSG8Q9UQ74 426 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 FAM19A2Q8N3H0 131 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 GNB1LQ9BYB4 327 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 VWC2LB2RUY7 222 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 TMEM249Q2WGJ8 235 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 CD300EQ496F6 205 aaPredicted RBP7.75□□□□□ -1.17
CUX1-201ENST00000292535 IGLV3-19P01714 112 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 DLX4Q92988 240 aaPredicted RBP7.75□□□□□ -1.17
CUX1-201ENST00000292535 SIGLEC12Q96PQ1 595 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 MBNL3Q9NUK0 354 aaKnown RBP7.75□□□□□ -1.17
CUX1-201ENST00000292535 LHX2P50458 406 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.75□□□□□ -1.17
CUX1-201ENST00000292535 INAFM2P0DMQ5 153 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 SUMO4Q6EEV6 95 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 TEX38Q6PEX7 206 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 IFITM2Q01629 132 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 A0A0G2JMM0 328 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 A0A1W2PPB8 328 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 A0A1W2PRS3 328 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 KIR3DP1A8MWS1 328 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 B4DSR2 109 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 IL18BPO95998 194 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 GATA2P23769 480 aaPredicted RBP7.75□□□□□ -1.17
CUX1-201ENST00000292535 TIMP3P35625 211 aa7.75□□□□□ -1.17
CUX1-201ENST00000292535 SERF1AO75920 110 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 GAGE2EQ4V326 116 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 CHAC1Q9BUX1 264 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 GAGE2DQ9UEU5 116 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 CCL3L1P16619 93 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 COL11A2P13942 1736 aaPredicted RBP7.74□□□□□ -1.17
CUX1-201ENST00000292535 TIAF1O95411 115 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 BMPERQ8N8U9 685 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 CCL1P22362 96 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 C3orf36Q3SXR2 165 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 EPDR1Q9UM22 224 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 TMEM170AQ8WVE7 144 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 H3BMM0 161 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 GATA3P23771 443 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 HSD52Q0P140 79 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 ACTL10Q5JWF8 245 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 FAM201AQ5SY85 155 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 MUC21A0A0G2JKD1 596 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 MUC21A0A140T8X8 626 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 VCYO14598 125 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 SPANXA1Q9NS26 97 aa7.74□□□□□ -1.17
CUX1-201ENST00000292535 GNG5P63218 68 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 EFNB3Q15768 340 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 ZNF479Q96JC4 524 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 MYMXA0A1B0GTQ4 84 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 TMEM8BA6NDV4 472 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 DEFB121Q5J5C9 76 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 MEGF9Q9H1U4 602 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 SRRM4A7MD48 611 aaKnown RBP7.73□□□□□ -1.17
CUX1-201ENST00000292535 ZNF525Q8N782 197 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 IGHV3OR16-8A0A075B7F1 116 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 HIST1H4AP62805 103 aaKnown RBP7.73□□□□□ -1.17
CUX1-201ENST00000292535 GAGE2BQ13066 116 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 RBMY1FQ15415 496 aaKnown RBP7.73□□□□□ -1.17
CUX1-201ENST00000292535 C1QL2Q7Z5L3 287 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 E9PQ18 207 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 TIMM23O14925 209 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 SRP19P09132 144 aaKnown RBP7.73□□□□□ -1.17
CUX1-201ENST00000292535 FOXL1Q12952 345 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 VMO1Q7Z5L0 202 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 RNASE7Q9H1E1 156 aaKnown RBP7.73□□□□□ -1.17
CUX1-201ENST00000292535 KIF26AQ9ULI4 1882 aaPredicted RBP7.73□□□□□ -1.17
CUX1-201ENST00000292535 SLC25A16P16260 332 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 FBLN7Q53RD9 439 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 RCHY1Q96PM5 261 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 SS18Q15532 418 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 C3orf56Q8N813 242 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 GZMBP10144 247 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 IFITM3Q01628 133 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 GAGE13Q4V321 117 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 SAMD5Q5TGI4 173 aa7.73□□□□□ -1.17
CUX1-201ENST00000292535 FNDC4Q9H6D8 234 aaPredicted RBP7.72□□□□□ -1.17
CUX1-201ENST00000292535 IGFBP3P17936 291 aaPredicted RBP7.72□□□□□ -1.17
CUX1-201ENST00000292535 EPG5Q9HCE0 2579 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 A8MXK9 166 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 EREGO14944 169 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 SIGMAR1Q99720 223 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 THSD7AQ9UPZ6 1657 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 LINC00114Q6XXX2 140 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 C4orf51C9J302 202 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 RPL35AP18077 110 aaKnown RBP7.72□□□□□ -1.17
CUX1-201ENST00000292535 ADMP35318 185 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 PSG7Q13046 419 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 LAMTOR2Q9Y2Q5 125 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms