RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TPTE2P1Q5T6R2 138 aa9.4□□□□□ -0.9
USP53-201ENST00000274030 TSKUQ8WUA8 353 aa9.4□□□□□ -0.9
USP53-201ENST00000274030 MBD3L1Q8WWY6 194 aa9.4□□□□□ -0.9
USP53-201ENST00000274030 ZNF407Q9C0G0 2248 aa9.4□□□□□ -0.9
USP53-201ENST00000274030 TRAV8-1A0A0A6YYK1 113 aa9.4□□□□□ -0.9
USP53-201ENST00000274030 LOC105371267A0A1B0GV96 52 aa9.4□□□□□ -0.9
USP53-201ENST00000274030 TMEM8BA6NDV4 472 aa9.4□□□□□ -0.9
USP53-201ENST00000274030 COL8A2P25067 703 aa9.4□□□□□ -0.9
USP53-201ENST00000274030 AGMATQ9BSE5 352 aa9.4□□□□□ -0.9
USP53-201ENST00000274030 ZNRD1Q9P1U0 126 aa9.4□□□□□ -0.9
USP53-201ENST00000274030 STAG3L3P0CL85 134 aa9.4□□□□□ -0.91
USP53-201ENST00000274030 MPZP25189 248 aa9.4□□□□□ -0.91
USP53-201ENST00000274030 CHTOPQ9Y3Y2 248 aaKnown RBP9.4□□□□□ -0.91
USP53-201ENST00000274030 RBMY1BA6NDE4 496 aaKnown RBP9.4□□□□□ -0.91
USP53-201ENST00000274030 RBMY1EA6NEQ0 496 aaKnown RBP9.4□□□□□ -0.91
USP53-201ENST00000274030 RBMY1DP0C7P1 496 aaKnown RBP9.4□□□□□ -0.91
USP53-201ENST00000274030 RBMY1A1P0DJD3 496 aaKnown RBP9.4□□□□□ -0.91
USP53-201ENST00000274030 RBMY1CP0DJD4 496 aa9.4□□□□□ -0.91
USP53-201ENST00000274030 GTSCR1Q86UQ5 136 aa9.4□□□□□ -0.91
USP53-201ENST00000274030 BMPERQ8N8U9 685 aa9.4□□□□□ -0.91
USP53-201ENST00000274030 TNFRSF14Q92956 283 aa9.4□□□□□ -0.91
USP53-201ENST00000274030 SRRM4A7MD48 611 aaKnown RBP9.39□□□□□ -0.91
USP53-201ENST00000274030 ZNF815PA8K554 130 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 TCRAP04437 139 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 RPL35AP18077 110 aaKnown RBP9.39□□□□□ -0.91
USP53-201ENST00000274030 NXT2Q9NPJ8 142 aaKnown RBP9.39□□□□□ -0.91
USP53-201ENST00000274030 CYTL1Q9NRR1 136 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 LSM4Q9Y4Z0 139 aaKnown RBP9.39□□□□□ -0.91
USP53-201ENST00000274030 A0A1B0GV72 72 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 FCN3O75636 299 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 ERVK11-1P61568 191 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 PAX2Q02962 417 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 BEND2Q8NDZ0 799 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 IFI27L1Q96BM0 104 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 MEGF9Q9H1U4 602 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 CRIM1Q9NZV1 1036 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 TMEM249Q2WGJ8 235 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 RNF182Q8N6D2 247 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 MDS2Q8NDY4 140 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 SHANK1Q9Y566 2161 aa9.39□□□□□ -0.91
USP53-201ENST00000274030 NAA38Q9BRA0 125 aaKnown RBP9.39□□□□□ -0.91
USP53-201ENST00000274030 IGKV1D-17A0A075B6S4 117 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 TRAV8-2A0A0B4J237 113 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 A0A1B0GWJ7 208 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 NTF4P34130 210 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 NMSQ5H8A3 153 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 ACTL10Q5JWF8 245 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 ZNF474Q6S9Z5 364 aaPredicted RBP9.38□□□□□ -0.91
USP53-201ENST00000274030 GNB1LQ9BYB4 327 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 TRAV9-2A0A087WT02 112 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 FAM90A9PA6NNJ1 464 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 D6R8Y8 96 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 C20orf204Q6ZNR8 217 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 GAFA1Q96PS6 74 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 DOCK9Q9BZ29 2069 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 ADARB2-AS1A8MUL3 147 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 H0YJW9 148 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 OVOL1O14753 267 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 LYZL1Q6UWQ5 148 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 SLC25A48Q6ZT89 311 aaKnown RBP9.38□□□□□ -0.91
USP53-201ENST00000274030 MAPK1IP1LQ8NDC0 245 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 OR5A1Q8NGJ0 315 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 RALGAPA2Q2PPJ7 1873 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 OR9G4Q8NGQ1 327 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 UBE2E2Q96LR5 201 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 HS3ST6Q96QI5 342 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 TRGV11A0A075B6L2 103 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 ZNF876PQ49A33 203 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 PRR30Q53SZ7 412 aaPredicted RBP9.38□□□□□ -0.91
USP53-201ENST00000274030 HIST1H2BLQ99880 126 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 CLDN16Q9Y5I7 305 aa9.38□□□□□ -0.91
USP53-201ENST00000274030 IGKCP01834 107 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 CRPP02741 224 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 SRSF7Q16629 238 aaKnown RBP eCLIP9.37□□□□□ -0.91
USP53-201ENST00000274030 ORMDL2Q53FV1 153 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 C5orf30Q96GV9 206 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 RCHY1Q96PM5 261 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 BPESC1Q9GZL8 116 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 A0A0G2JRQ6 117 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 B3GALT5-AS1P59052 145 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 C5orf64Q2M2E5 130 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 PPBPP02775 128 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 IGKV1-16P04430 117 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 CD5P06127 495 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 Q6P435 159 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 YLPM1P49750 1951 aaKnown RBP9.37□□□□□ -0.91
USP53-201ENST00000274030 TRGV1A0A0A0MS02 117 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 BUB1B-PAK6H3BSN5 160 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 F2Z2F3 143 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 LINC00158P58513 81 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 LINC01551Q86U37 167 aa9.37□□□□□ -0.91
USP53-201ENST00000274030 B4DSR2 109 aa9.36□□□□□ -0.91
USP53-201ENST00000274030 DEFB121Q5J5C9 76 aa9.36□□□□□ -0.91
USP53-201ENST00000274030 GLRX5Q86SX6 157 aa9.36□□□□□ -0.91
USP53-201ENST00000274030 PIP4P2Q8N4L2 257 aa9.36□□□□□ -0.91
USP53-201ENST00000274030 A0A087WX48 190 aa9.36□□□□□ -0.91
USP53-201ENST00000274030 ZNF138P52744 262 aa9.36□□□□□ -0.91
USP53-201ENST00000274030 LCNL1Q6ZST4 164 aa9.36□□□□□ -0.91
USP53-201ENST00000274030 ATP5L2Q7Z4Y8 100 aa9.36□□□□□ -0.91
USP53-201ENST00000274030 SIGLEC9Q9Y336 463 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms