RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 PROSCO94903 275 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 DNAL4O96015 105 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 IGLV1-51P01701 117 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 HLA-DRB1P01911 266 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 CD14P08571 375 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 TPM1P09493 284 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 OR4E1P0C645 316 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 PET100P0DJ07 73 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 SMIM10L2AP0DMW4 78 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 SMIM10L2BP0DMW5 78 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 SRIP30626 198 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 RPL5P46777 297 aaKnown RBP-0.2□□□□□ -2.44
VPS35-212ENST00000640313 SPINT3P49223 89 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 BLVRAP53004 296 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 DSCR4P56555 118 aaPredicted RBP-0.2□□□□□ -2.44
VPS35-212ENST00000640313 FXYD4P59646 89 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 SNRPD2P62316 118 aaKnown RBP-0.2□□□□□ -2.44
VPS35-212ENST00000640313 SKP1P63208 163 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 OR2F1Q13607 317 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 ANGPT1Q15389 498 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 TSNQ15631 228 aaKnown RBP-0.2□□□□□ -2.44
VPS35-212ENST00000640313 BATFQ16520 125 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 ACOT6Q3I5F7 207 aaPredicted RBP-0.2□□□□□ -2.44
VPS35-212ENST00000640313 KHDC3LQ587J8 217 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 COQ5Q5HYK3 327 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 HAGHLQ6PII5 290 aaPredicted RBP-0.2□□□□□ -2.44
VPS35-212ENST00000640313 CD200R1LQ6Q8B3 271 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 C10orf99Q6UWK7 81 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 Q6ZS92 163 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 LYG2Q86SG7 212 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 PRR15Q8IV56 129 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 SYCE1Q8N0S2 351 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 HIST3H2BBQ8N257 126 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 OR2T35Q8NGX2 323 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 MCFD2Q8NI22 146 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 PIGXQ8TBF5 258 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 STAG3L4Q8TBR4 150 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 TEX47Q8TBZ9 253 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 PSMF1Q92530 271 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 SLC35B4Q969S0 331 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 GPR146Q96CH1 333 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 GINS4Q9BRT9 223 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 DCUN1D5Q9BTE7 237 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 OR51V1Q9H2C8 321 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 BCL2L10Q9HD36 194 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 OSTCQ9NRP0 149 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 SLC39A9Q9NUM3 307 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 C14orf105Q9NVL8 296 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 FKBP14Q9NWM8 211 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 NHP2Q9NX24 153 aaKnown RBP-0.2□□□□□ -2.44
VPS35-212ENST00000640313 ORMDL1Q9P0S3 153 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 ERGIC3Q9Y282 383 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 PKIGQ9Y2B9 76 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 SLC35A3Q9Y2D2 325 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 UTP11Q9Y3A2 253 aaKnown RBP-0.2□□□□□ -2.44
VPS35-212ENST00000640313 CADP27708 2225 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 MAST2Q6P0Q8 1798 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 MYO3BQ8WXR4 1341 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 NUP155O75694 1391 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 SPTBP11277 2137 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 RALGAPA2Q2PPJ7 1873 aa-0.2□□□□□ -2.44
VPS35-212ENST00000640313 HEATR1Q9H583 2144 aaKnown RBP-0.2□□□□□ -2.44
VPS35-212ENST00000640313 NCOR1O75376 2440 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 DENND4CQ5VZ89 1909 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 PTPN13Q12923 2485 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 TGP01266 2768 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 PEAK1Q9H792 1746 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 CECR2Q9BXF3 1484 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 COL6A3P12111 3177 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 A0A087WUJ7 227 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 A0A087X0T9 212 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP-0.21□□□□□ -2.44
VPS35-212ENST00000640313 TRAV10A0A0B4J240 114 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 TRAV26-2A0A0B4J265 109 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 TRBV30A0A0K0K1B3 111 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 FAM236DA0A1B0GTK5 79 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 A0A1B0GV50 99 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 NUPR2A6NF83 97 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 OR4C46A6NHA9 309 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 A6NN06 94 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 ZNF727A8MUV8 499 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 H0Y980 276 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 TGOLN2O43493 480 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 GADD45GO95257 159 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 CNIH1O95406 144 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 AHSA1O95433 338 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 SPINK1P00995 79 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 IFNA10P01566 189 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 ISG15P05161 165 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 OCMP0CE72 109 aaPredicted RBP-0.21□□□□□ -2.44
VPS35-212ENST00000640313 FAM236CP0DP71 79 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 CCL4P13236 92 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 UCHL3P15374 230 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 MYL12AP19105 171 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 KDELR1P24390 212 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 MAGEA2P43356 314 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 TCL1AP56279 114 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 DEFA1P59665 94 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 DYNLT1P63172 113 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 EIF3IQ13347 325 aaKnown RBP-0.21□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms