RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 OR4C16Q8NGL9 310 aa13.84□□□□□ -0.19
CLN3-262ENST00000637699 NEU1Q99519 415 aa13.84□□□□□ -0.19
CLN3-262ENST00000637699 SOSTQ9BQB4 213 aa13.84□□□□□ -0.19
CLN3-262ENST00000637699 RTBDNQ9BSG5 229 aaPredicted RBP13.84□□□□□ -0.19
CLN3-262ENST00000637699 HEYLQ9NQ87 328 aaPredicted RBP13.84□□□□□ -0.19
CLN3-262ENST00000637699 TMEM189A5PLL7 270 aa13.83□□□□□ -0.2
CLN3-262ENST00000637699 ZNF705FA8MVS1 300 aaPredicted RBP13.83□□□□□ -0.2
CLN3-262ENST00000637699 NOL3O60936 208 aaKnown RBP13.83□□□□□ -0.2
CLN3-262ENST00000637699 ZNF705DP0CH99 300 aaPredicted RBP13.83□□□□□ -0.2
CLN3-262ENST00000637699 ZNF705BP0CI00 300 aaPredicted RBP13.83□□□□□ -0.2
CLN3-262ENST00000637699 AKAIN1P0CW23 69 aa13.83□□□□□ -0.2
CLN3-262ENST00000637699 HLA-DRB4P13762 266 aa13.83□□□□□ -0.2
CLN3-262ENST00000637699 DEFB1P60022 68 aa13.83□□□□□ -0.2
CLN3-262ENST00000637699 SPCS3P61009 180 aa13.83□□□□□ -0.2
CLN3-262ENST00000637699 SOHLH1Q5JUK2 328 aa13.83□□□□□ -0.2
CLN3-262ENST00000637699 SIGLEC15Q6ZMC9 328 aa13.83□□□□□ -0.2
CLN3-262ENST00000637699 CCDC71LQ8N9Z2 235 aa13.83□□□□□ -0.2
CLN3-262ENST00000637699 SEPSECSQ9HD40 501 aaKnown RBP13.83□□□□□ -0.2
CLN3-262ENST00000637699 PLA2G2EQ9NZK7 142 aa13.83□□□□□ -0.2
CLN3-262ENST00000637699 RABL2AQ9UBK7 228 aaPredicted RBP13.83□□□□□ -0.2
CLN3-262ENST00000637699 RABL2BQ9UNT1 228 aa13.83□□□□□ -0.2
CLN3-262ENST00000637699 HLA-DRB4X5D2U9 266 aa13.83□□□□□ -0.2
CLN3-262ENST00000637699 DISC1C4P0D8 188 aa13.82□□□□□ -0.2
CLN3-262ENST00000637699 BUB3O43684 328 aa13.82□□□□□ -0.2
CLN3-262ENST00000637699 GSTZ1O43708 216 aaPredicted RBP13.82□□□□□ -0.2
CLN3-262ENST00000637699 SLC25A4P12235 298 aa13.82□□□□□ -0.2
CLN3-262ENST00000637699 HTN3P15516 51 aa13.82□□□□□ -0.2
CLN3-262ENST00000637699 UCP1P25874 307 aa13.82□□□□□ -0.2
CLN3-262ENST00000637699 GDF5OSQ5U4N7 250 aa13.82□□□□□ -0.2
CLN3-262ENST00000637699 MCFD2Q8NI22 146 aa13.82□□□□□ -0.2
CLN3-262ENST00000637699 FAM210BQ96KR6 192 aa13.82□□□□□ -0.2
CLN3-262ENST00000637699 ANKRD20A5PA0PJZ0 165 aa13.81□□□□□ -0.2
CLN3-262ENST00000637699 SMIM9A6NGZ8 99 aa13.81□□□□□ -0.2
CLN3-262ENST00000637699 NKX2-1P43699 371 aaPredicted RBP13.81□□□□□ -0.2
CLN3-262ENST00000637699 OR51S1Q8NGJ8 323 aa13.81□□□□□ -0.2
CLN3-262ENST00000637699 NPIPB3Q92617 1050 aa13.81□□□□□ -0.2
CLN3-262ENST00000637699 NIPSNAP3BQ9BS92 247 aa13.81□□□□□ -0.2
CLN3-262ENST00000637699 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.81□□□□□ -0.2
CLN3-262ENST00000637699 DKK2Q9UBU2 259 aa13.81□□□□□ -0.2
CLN3-262ENST00000637699 RSL24D1Q9UHA3 163 aaKnown RBP13.81□□□□□ -0.2
CLN3-262ENST00000637699 GPR132Q9UNW8 380 aa13.81□□□□□ -0.2
CLN3-262ENST00000637699 RFNGQ9Y644 331 aa13.81□□□□□ -0.2
CLN3-262ENST00000637699 FABP12A6NFH5 140 aa13.8□□□□□ -0.2
CLN3-262ENST00000637699 OR5AC1P0C628 307 aa13.8□□□□□ -0.2
CLN3-262ENST00000637699 RD3LP0DJH9 198 aa13.8□□□□□ -0.2
CLN3-262ENST00000637699 C2orf83Q53S99 150 aa13.8□□□□□ -0.2
CLN3-262ENST00000637699 C1orf134Q5TEV5 83 aa13.8□□□□□ -0.2
CLN3-262ENST00000637699 FAM222AQ5U5X8 452 aa13.8□□□□□ -0.2
CLN3-262ENST00000637699 OR52E5Q8NH55 327 aa13.8□□□□□ -0.2
CLN3-262ENST00000637699 LHFPL5Q8TAF8 219 aa13.8□□□□□ -0.2
CLN3-262ENST00000637699 RNASEH2CQ8TDP1 164 aaKnown RBP13.8□□□□□ -0.2
CLN3-262ENST00000637699 GLYATL2Q8WU03 294 aa13.8□□□□□ -0.2
CLN3-262ENST00000637699 ACY3Q96HD9 319 aa13.8□□□□□ -0.2
CLN3-262ENST00000637699 LINC00052Q96N35 136 aa13.8□□□□□ -0.2
CLN3-262ENST00000637699 TMEM222Q9H0R3 208 aa13.8□□□□□ -0.2
CLN3-262ENST00000637699 C14orf166Q9Y224 244 aaKnown RBP13.8□□□□□ -0.2
CLN3-262ENST00000637699 NXPH3O95157 252 aa13.79□□□□□ -0.2
CLN3-262ENST00000637699 CDS2O95674 445 aa13.79□□□□□ -0.2
CLN3-262ENST00000637699 SURF2Q15527 256 aaPredicted RBP13.79□□□□□ -0.2
CLN3-262ENST00000637699 RNF212Q495C1 297 aa13.79□□□□□ -0.2
CLN3-262ENST00000637699 SLC24A4Q8NFF2 622 aa13.79□□□□□ -0.2
CLN3-262ENST00000637699 OR51G1Q8NGK1 321 aa13.79□□□□□ -0.2
CLN3-262ENST00000637699 NAA60Q9H7X0 242 aa13.79□□□□□ -0.2
CLN3-262ENST00000637699 TEX13DA0A0J9YY54 714 aaPredicted RBP13.78□□□□□ -0.2
CLN3-262ENST00000637699 CEBPZOSA8MTT3 80 aa13.78□□□□□ -0.2
CLN3-262ENST00000637699 B3GALNT1O75752 331 aa13.78□□□□□ -0.2
CLN3-262ENST00000637699 TOMM40O96008 361 aa13.78□□□□□ -0.2
CLN3-262ENST00000637699 AARDQ4LEZ3 155 aa13.78□□□□□ -0.2
CLN3-262ENST00000637699 FAM219AQ8IW50 185 aa13.78□□□□□ -0.2
CLN3-262ENST00000637699 SELENOHQ8IZQ5 122 aaKnown RBP13.78□□□□□ -0.2
CLN3-262ENST00000637699 OR4B1Q8NGF8 309 aa13.78□□□□□ -0.2
CLN3-262ENST00000637699 TMEM170AQ8WVE7 144 aa13.78□□□□□ -0.2
CLN3-262ENST00000637699 PRRT1Q99946 306 aa13.78□□□□□ -0.2
CLN3-262ENST00000637699 CACNG5Q9UF02 275 aa13.78□□□□□ -0.2
CLN3-262ENST00000637699 TEX48A0A1B0GUV7 120 aa13.77□□□□□ -0.21
CLN3-262ENST00000637699 CRYM-AS1A6NIL9 109 aa13.77□□□□□ -0.21
CLN3-262ENST00000637699 PSG1P11464 419 aa13.77□□□□□ -0.21
CLN3-262ENST00000637699 ETFRF1Q6IPR1 90 aa13.77□□□□□ -0.21
CLN3-262ENST00000637699 PBDC1Q9BVG4 233 aa13.77□□□□□ -0.21
CLN3-262ENST00000637699 WDR12Q9GZL7 423 aaKnown RBP13.77□□□□□ -0.21
CLN3-262ENST00000637699 SLC35B3Q9H1N7 401 aa13.77□□□□□ -0.21
CLN3-262ENST00000637699 SAV1Q9H4B6 383 aaPredicted RBP13.77□□□□□ -0.21
CLN3-262ENST00000637699 LRP1BQ9NZR2 4599 aa13.77□□□□□ -0.21
CLN3-262ENST00000637699 NACAE9PAV3 2078 aa13.76□□□□□ -0.21
CLN3-262ENST00000637699 CCDC160A6NGH7 325 aa13.76□□□□□ -0.21
CLN3-262ENST00000637699 TMEM88Q6PEY1 159 aa13.76□□□□□ -0.21
CLN3-262ENST00000637699 GSG1LQ6UXU4 331 aa13.76□□□□□ -0.21
CLN3-262ENST00000637699 ZNF709Q8N972 641 aa13.76□□□□□ -0.21
CLN3-262ENST00000637699 GPR146Q96CH1 333 aa13.76□□□□□ -0.21
CLN3-262ENST00000637699 RBM38Q9H0Z9 239 aaKnown RBP13.76□□□□□ -0.21
CLN3-262ENST00000637699 ID1P41134 155 aa13.75□□□□□ -0.21
CLN3-262ENST00000637699 FOXI2Q6ZQN5 318 aa13.75□□□□□ -0.21
CLN3-262ENST00000637699 COQ8AQ8NI60 647 aa13.75□□□□□ -0.21
CLN3-262ENST00000637699 RBPMSQ93062 196 aaKnown RBP13.75□□□□□ -0.21
CLN3-262ENST00000637699 RNF125Q96EQ8 232 aa13.75□□□□□ -0.21
CLN3-262ENST00000637699 C7orf50Q9BRJ6 194 aaKnown RBP13.75□□□□□ -0.21
CLN3-262ENST00000637699 MCUBQ9NWR8 336 aa13.75□□□□□ -0.21
CLN3-262ENST00000637699 PRR13Q9NZ81 148 aa13.75□□□□□ -0.21
CLN3-262ENST00000637699 SCP2D1Q9UJQ7 156 aa13.75□□□□□ -0.21
CLN3-262ENST00000637699 GOLT1BQ9Y3E0 138 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms