RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TRIM63Q969Q1 353 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 SLC25A38Q96DW6 304 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 ZNF486Q96H40 463 aaPredicted RBP4.55□□□□□ -1.68
CUX1-220ENST00000607092 NSG2Q9Y328 171 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 PKD1P98161 4303 aa4.55□□□□□ -1.68
CUX1-220ENST00000607092 ANKRD20A5PA0PJZ0 165 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 INMT-MINDY4F8WBC2 141 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 CLN5O75503 358 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 TMEM50AO95807 157 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 ZNF688P0C7X2 276 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 PRSS3P35030 304 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 UCP3P55916 312 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 TAS2R20P59543 309 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 DHRS2Q13268 280 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 KLF9Q13886 244 aaPredicted RBP4.54□□□□□ -1.68
CUX1-220ENST00000607092 KIR3DS1Q14943 382 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 OR4X1Q8NH49 305 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 Q8WTZ3 238 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 SEC22AQ96IW7 307 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 MTFP1Q9UDX5 166 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 TMED3Q9Y3Q3 217 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 RFNGQ9Y644 331 aa4.54□□□□□ -1.68
CUX1-220ENST00000607092 LINC00854A0A1B0GVQ3 168 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 RTL8CO15255 209 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 PRAF2O60831 178 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 CCNKO75909 580 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 CDK2AP2O75956 126 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 CD74P04233 296 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 TCRBP04435 133 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 SLC25A4P12235 298 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 ID1P41134 155 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 OPRK1P41145 380 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 NKX2-1P43699 371 aaPredicted RBP4.53□□□□□ -1.68
CUX1-220ENST00000607092 AKR1C2P52895 323 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 C12orf74Q32Q52 190 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 PSMG4Q5JS54 123 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 C1orf134Q5TEV5 83 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 ETFRF1Q6IPR1 90 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 TBC1D26Q86UD7 250 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 AKAP14Q86UN6 197 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 C15orf53Q8NAA6 179 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 TMEM229BQ8NBD8 167 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 CSNK1G2-AS1Q8NCQ2 148 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 OR52I2Q8NH67 350 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 GPX8Q8TED1 209 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 DCANP1Q8TF63 244 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 RRNAD1Q96FB5 475 aaKnown RBP4.53□□□□□ -1.68
CUX1-220ENST00000607092 RAB40CQ96S21 281 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 NRN1Q9NPD7 142 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 ANAPC10Q9UM13 185 aa4.53□□□□□ -1.68
CUX1-220ENST00000607092 C7orf66A4D0T2 115 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 PMP2P02689 132 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 APOHP02749 345 aaPredicted RBP4.52□□□□□ -1.69
CUX1-220ENST00000607092 IL5P05113 134 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 FABP1P07148 127 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 GIG44P09565 113 aaPredicted RBP4.52□□□□□ -1.69
CUX1-220ENST00000607092 H2AFB1P0C5Y9 115 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 H2AFB2P0C5Z0 115 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 PTHLHP12272 177 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 HLA-DRB4P13762 266 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 TBPP20226 339 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 C4BPBP20851 252 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 S100A7P31151 101 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 RCVRNP35243 200 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 HTR2BP41595 481 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 TAS2R19P59542 299 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 YPEL3P61236 119 aaPredicted RBP4.52□□□□□ -1.69
CUX1-220ENST00000607092 PHLDA2Q53GA4 152 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 CT83Q5H943 113 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 TOR2AQ5JU69 321 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 ZNF705AQ6ZN79 300 aaPredicted RBP4.52□□□□□ -1.69
CUX1-220ENST00000607092 Q6ZR54 194 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 FAM219AQ8IW50 185 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 CCDC71LQ8N9Z2 235 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 SLC24A4Q8NFF2 622 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 OR1S2Q8NGQ3 325 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 RNASE11Q8TAA1 199 aaKnown RBP4.52□□□□□ -1.69
CUX1-220ENST00000607092 RNASEH2CQ8TDP1 164 aaKnown RBP4.52□□□□□ -1.69
CUX1-220ENST00000607092 MRGPRFQ96AM1 343 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 C16orf92Q96LL3 132 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 SLC25A21Q9BQT8 299 aaPredicted RBP4.52□□□□□ -1.69
CUX1-220ENST00000607092 NIPSNAP3BQ9BS92 247 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 ATG101Q9BSB4 218 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 KLK11Q9UBX7 282 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 GOLT1BQ9Y3E0 138 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 HLA-DRB4X5D2U9 266 aa4.52□□□□□ -1.69
CUX1-220ENST00000607092 PIGBOS1A0A0B4J2F0 54 aa4.51□□□□□ -1.69
CUX1-220ENST00000607092 IGHV3-66A0A0C4DH42 116 aa4.51□□□□□ -1.69
CUX1-220ENST00000607092 A0A1B0GU03 582 aa4.51□□□□□ -1.69
CUX1-220ENST00000607092 DBX1A6NMT0 343 aa4.51□□□□□ -1.69
CUX1-220ENST00000607092 KNCNA6PVL3 124 aa4.51□□□□□ -1.69
CUX1-220ENST00000607092 ZNF705FA8MVS1 300 aaPredicted RBP4.51□□□□□ -1.69
CUX1-220ENST00000607092 SNRPGP15A8MWD9 76 aa4.51□□□□□ -1.69
CUX1-220ENST00000607092 FAM90A26D6RGX4 464 aa4.51□□□□□ -1.69
CUX1-220ENST00000607092 H3BMM0 161 aa4.51□□□□□ -1.69
CUX1-220ENST00000607092 M0R2N4 97 aa4.51□□□□□ -1.69
CUX1-220ENST00000607092 NDUFB6O95139 128 aa4.51□□□□□ -1.69
CUX1-220ENST00000607092 IGHV3-48P01763 117 aa4.51□□□□□ -1.69
CUX1-220ENST00000607092 HBE1P02100 147 aa4.51□□□□□ -1.69
CUX1-220ENST00000607092 ZNF705DP0CH99 300 aaPredicted RBP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 155.4 ms