RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 IGHV3OR16-12A0A075B7B8 117 aa12.7□□□□□ -0.38
SHKBP1-223ENST00000600552 TOMM40O96008 361 aa12.7□□□□□ -0.38
SHKBP1-223ENST00000600552 EMP1P54849 157 aa12.7□□□□□ -0.38
SHKBP1-223ENST00000600552 LYZL2Q7Z4W2 148 aa12.7□□□□□ -0.38
SHKBP1-223ENST00000600552 LGI3Q8N145 548 aa12.7□□□□□ -0.38
SHKBP1-223ENST00000600552 CSNK1G2-AS1Q8NCQ2 148 aa12.7□□□□□ -0.38
SHKBP1-223ENST00000600552 MRPS26Q9BYN8 205 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-223ENST00000600552 ZFP92A6NM28 416 aa12.69□□□□□ -0.38
SHKBP1-223ENST00000600552 GSTZ1O43708 216 aaPredicted RBP12.69□□□□□ -0.38
SHKBP1-223ENST00000600552 NUTF2P61970 127 aaKnown RBP12.69□□□□□ -0.38
SHKBP1-223ENST00000600552 KLF9Q13886 244 aaPredicted RBP12.69□□□□□ -0.38
SHKBP1-223ENST00000600552 OR1S1Q8NH92 325 aa12.69□□□□□ -0.38
SHKBP1-223ENST00000600552 DTD1Q8TEA8 209 aa12.69□□□□□ -0.38
SHKBP1-223ENST00000600552 PPP1R14BQ96C90 147 aa12.69□□□□□ -0.38
SHKBP1-223ENST00000600552 SCP2D1Q9UJQ7 156 aa12.69□□□□□ -0.38
SHKBP1-223ENST00000600552 DNAH6Q9C0G6 4158 aa12.69□□□□□ -0.38
SHKBP1-223ENST00000600552 DEFB131BA0A096LNP1 70 aa12.68□□□□□ -0.38
SHKBP1-223ENST00000600552 H3BMM0 161 aa12.68□□□□□ -0.38
SHKBP1-223ENST00000600552 BUB3O43684 328 aa12.68□□□□□ -0.38
SHKBP1-223ENST00000600552 CCR6P51684 374 aa12.68□□□□□ -0.38
SHKBP1-223ENST00000600552 OR2F1Q13607 317 aa12.68□□□□□ -0.38
SHKBP1-223ENST00000600552 SMCO1Q147U7 214 aa12.68□□□□□ -0.38
SHKBP1-223ENST00000600552 C12orf74Q32Q52 190 aa12.68□□□□□ -0.38
SHKBP1-223ENST00000600552 NMSQ5H8A3 153 aa12.68□□□□□ -0.38
SHKBP1-223ENST00000600552 RNF125Q96EQ8 232 aa12.68□□□□□ -0.38
SHKBP1-223ENST00000600552 SCGB3A2Q96PL1 93 aa12.68□□□□□ -0.38
SHKBP1-223ENST00000600552 C1QTNF4Q9BXJ3 329 aa12.68□□□□□ -0.38
SHKBP1-223ENST00000600552 KRTAP17-1Q9BYP8 105 aa12.68□□□□□ -0.38
SHKBP1-223ENST00000600552 U3KQ87 197 aa12.68□□□□□ -0.38
SHKBP1-223ENST00000600552 ANKRD20A5PA0PJZ0 165 aa12.67□□□□□ -0.38
SHKBP1-223ENST00000600552 ALDH3B2P48448 385 aa12.67□□□□□ -0.38
SHKBP1-223ENST00000600552 LYZP61626 148 aa12.67□□□□□ -0.38
SHKBP1-223ENST00000600552 ZNF90Q03938 601 aa12.67□□□□□ -0.38
SHKBP1-223ENST00000600552 IL22RA2Q969J5 263 aa12.67□□□□□ -0.38
SHKBP1-223ENST00000600552 SLC35E1Q96K37 410 aa12.67□□□□□ -0.38
SHKBP1-223ENST00000600552 SCRT1Q9BWW7 348 aa12.67□□□□□ -0.38
SHKBP1-223ENST00000600552 CTDSPLO15194 276 aa12.66□□□□□ -0.38
SHKBP1-223ENST00000600552 IAPPP10997 89 aa12.66□□□□□ -0.38
SHKBP1-223ENST00000600552 GDF5OSQ5U4N7 250 aa12.66□□□□□ -0.38
SHKBP1-223ENST00000600552 TMED4Q7Z7H5 227 aa12.66□□□□□ -0.38
SHKBP1-223ENST00000600552 OR4B1Q8NGF8 309 aa12.66□□□□□ -0.38
SHKBP1-223ENST00000600552 HSPB7Q9UBY9 170 aa12.66□□□□□ -0.38
SHKBP1-223ENST00000600552 CACFD1Q9UGQ2 172 aa12.66□□□□□ -0.38
SHKBP1-223ENST00000600552 A0A0B4J2A0 478 aa12.65□□□□□ -0.38
SHKBP1-223ENST00000600552 ANXA3P12429 323 aa12.65□□□□□ -0.38
SHKBP1-223ENST00000600552 COQ8AQ8NI60 647 aa12.65□□□□□ -0.38
SHKBP1-223ENST00000600552 RNF126Q9BV68 326 aa12.65□□□□□ -0.38
SHKBP1-223ENST00000600552 WDR12Q9GZL7 423 aaKnown RBP12.65□□□□□ -0.38
SHKBP1-223ENST00000600552 RSL24D1Q9UHA3 163 aaKnown RBP12.65□□□□□ -0.38
SHKBP1-223ENST00000600552 SHPKQ9UHJ6 478 aa12.65□□□□□ -0.38
SHKBP1-223ENST00000600552 PFDN2Q9UHV9 154 aa12.65□□□□□ -0.38
SHKBP1-223ENST00000600552 FABP12A6NFH5 140 aa12.64□□□□□ -0.39
SHKBP1-223ENST00000600552 M0R2N4 97 aa12.64□□□□□ -0.39
SHKBP1-223ENST00000600552 HLA-DRB4P13762 266 aa12.64□□□□□ -0.39
SHKBP1-223ENST00000600552 ID1P41134 155 aa12.64□□□□□ -0.39
SHKBP1-223ENST00000600552 SUPT4H1P63272 117 aaKnown RBP12.64□□□□□ -0.39
SHKBP1-223ENST00000600552 GAMTQ14353 236 aa12.64□□□□□ -0.39
SHKBP1-223ENST00000600552 DYNC2LI1Q8TCX1 351 aa12.64□□□□□ -0.39
SHKBP1-223ENST00000600552 CCDC59Q9P031 241 aaKnown RBP12.64□□□□□ -0.39
SHKBP1-223ENST00000600552 RABL2AQ9UBK7 228 aaPredicted RBP12.64□□□□□ -0.39
SHKBP1-223ENST00000600552 RABL2BQ9UNT1 228 aa12.64□□□□□ -0.39
SHKBP1-223ENST00000600552 HLA-DRB4X5D2U9 266 aa12.64□□□□□ -0.39
SHKBP1-223ENST00000600552 GPX4P36969 197 aaPredicted RBP12.63□□□□□ -0.39
SHKBP1-223ENST00000600552 NKX2-1P43699 371 aaPredicted RBP12.63□□□□□ -0.39
SHKBP1-223ENST00000600552 RAB2BQ8WUD1 216 aa12.63□□□□□ -0.39
SHKBP1-223ENST00000600552 NDUFAF3Q9BU61 184 aa12.63□□□□□ -0.39
SHKBP1-223ENST00000600552 SEPSECSQ9HD40 501 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-223ENST00000600552 PLA2G2EQ9NZK7 142 aa12.63□□□□□ -0.39
SHKBP1-223ENST00000600552 IGKV1D-37A0A075B6S9 117 aa12.62□□□□□ -0.39
SHKBP1-223ENST00000600552 SNRPGP15A8MWD9 76 aa12.62□□□□□ -0.39
SHKBP1-223ENST00000600552 NOL3O60936 208 aaKnown RBP12.62□□□□□ -0.39
SHKBP1-223ENST00000600552 FABP1P07148 127 aa12.62□□□□□ -0.39
SHKBP1-223ENST00000600552 HTN3P15516 51 aa12.62□□□□□ -0.39
SHKBP1-223ENST00000600552 TNFSF8P32971 234 aa12.62□□□□□ -0.39
SHKBP1-223ENST00000600552 NUP62P37198 522 aaPredicted RBP12.62□□□□□ -0.39
SHKBP1-223ENST00000600552 RAB11AP62491 216 aa12.62□□□□□ -0.39
SHKBP1-223ENST00000600552 OR8I2Q8N0Y5 310 aa12.62□□□□□ -0.39
SHKBP1-223ENST00000600552 C7orf50Q9BRJ6 194 aaKnown RBP12.62□□□□□ -0.39
SHKBP1-223ENST00000600552 F6UB75 175 aa12.61□□□□□ -0.39
SHKBP1-223ENST00000600552 SPART-AS1P0CW21 52 aa12.61□□□□□ -0.39
SHKBP1-223ENST00000600552 VAMP1P23763 118 aa12.61□□□□□ -0.39
SHKBP1-223ENST00000600552 SRPXP78539 464 aa12.61□□□□□ -0.39
SHKBP1-223ENST00000600552 PYDC2Q56P42 97 aa12.61□□□□□ -0.39
SHKBP1-223ENST00000600552 OR8G2PQ6IF36 304 aa12.61□□□□□ -0.39
SHKBP1-223ENST00000600552 MCFD2Q8NI22 146 aa12.61□□□□□ -0.39
SHKBP1-223ENST00000600552 MAGT1Q9H0U3 335 aa12.61□□□□□ -0.39
SHKBP1-223ENST00000600552 SLC35B3Q9H1N7 401 aa12.61□□□□□ -0.39
SHKBP1-223ENST00000600552 SAV1Q9H4B6 383 aaPredicted RBP12.61□□□□□ -0.39
SHKBP1-223ENST00000600552 TMBIM6P55061 237 aa12.6□□□□□ -0.39
SHKBP1-223ENST00000600552 EBLN2Q6P2I7 272 aa12.6□□□□□ -0.39
SHKBP1-223ENST00000600552 FOXI2Q6ZQN5 318 aa12.6□□□□□ -0.39
SHKBP1-223ENST00000600552 UBE2DNLQ8IWF7 75 aa12.6□□□□□ -0.39
SHKBP1-223ENST00000600552 POM121L12Q8N7R1 296 aa12.6□□□□□ -0.39
SHKBP1-223ENST00000600552 SLC25A22Q9H936 323 aa12.6□□□□□ -0.39
SHKBP1-223ENST00000600552 AMBPP02760 352 aa12.59□□□□□ -0.39
SHKBP1-223ENST00000600552 P0DMU3 169 aa12.59□□□□□ -0.39
SHKBP1-223ENST00000600552 FAM231AP0DMU4 169 aa12.59□□□□□ -0.39
SHKBP1-223ENST00000600552 FAM231CP0DMU5 169 aa12.59□□□□□ -0.39
SHKBP1-223ENST00000600552 FAUP35544 74 aaKnown RBP12.59□□□□□ -0.39
SHKBP1-223ENST00000600552 PSMB3P49720 205 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms