RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 ZNF680Q8NEM1 530 aa8.47□□□□□ -1.05
HIF3A-217ENST00000600236 RNASE11Q8TAA1 199 aaKnown RBP8.47□□□□□ -1.05
HIF3A-217ENST00000600236 LINC00476Q8WZB0 136 aa8.47□□□□□ -1.05
HIF3A-217ENST00000600236 TP53RKQ96S44 253 aa8.47□□□□□ -1.05
HIF3A-217ENST00000600236 RNF126Q9BV68 326 aa8.47□□□□□ -1.05
HIF3A-217ENST00000600236 TMEM231Q9H6L2 316 aa8.47□□□□□ -1.05
HIF3A-217ENST00000600236 MBD2Q9UBB5 411 aa8.47□□□□□ -1.05
HIF3A-217ENST00000600236 TENM2Q9NT68 2774 aa8.47□□□□□ -1.05
HIF3A-217ENST00000600236 IGKV3-7A0A075B6H7 116 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 MPTX1A8MV57 137 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 INS-IGF2F8WCM5 200 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 H0YIZ8 118 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 CDS2O95674 445 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 LY6G6CO95867 125 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 IFNA7P01567 189 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 HOXB5P09067 269 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 IAH1Q2TAA2 248 aaPredicted RBP8.46□□□□□ -1.06
HIF3A-217ENST00000600236 CEMP1Q6PRD7 247 aaPredicted RBP8.46□□□□□ -1.06
HIF3A-217ENST00000600236 ZNF600Q6ZNG1 722 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 SLC51BQ86UW2 128 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 APRG1Q8IVJ8 170 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 LHFPL5Q8TAF8 219 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 GATAD1Q8WUU5 269 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 RRNAD1Q96FB5 475 aaKnown RBP8.46□□□□□ -1.06
HIF3A-217ENST00000600236 AQP10Q96PS8 301 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 ARL6Q9H0F7 186 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 CSTL1Q9H114 145 aa8.46□□□□□ -1.06
HIF3A-217ENST00000600236 STARD9Q9P2P6 4700 aa8.45□□□□□ -1.06
HIF3A-217ENST00000600236 IGHV3-49A0A0A0MS15 119 aa8.45□□□□□ -1.06
HIF3A-217ENST00000600236 A0A1W2PS18 150 aa8.45□□□□□ -1.06
HIF3A-217ENST00000600236 DNASE2O00115 360 aaPredicted RBP8.45□□□□□ -1.06
HIF3A-217ENST00000600236 ST8SIA3O43173 380 aa8.45□□□□□ -1.06
HIF3A-217ENST00000600236 BCL2L11O43521 198 aa8.45□□□□□ -1.06
HIF3A-217ENST00000600236 TSC22D2O75157 780 aa8.45□□□□□ -1.06
HIF3A-217ENST00000600236 IGHV3-48P01763 117 aa8.45□□□□□ -1.06
HIF3A-217ENST00000600236 SP6Q3SY56 376 aa8.45□□□□□ -1.06
HIF3A-217ENST00000600236 LRRC37A5PQ49AS3 106 aa8.45□□□□□ -1.06
HIF3A-217ENST00000600236 SPINK9Q5DT21 86 aa8.45□□□□□ -1.06
HIF3A-217ENST00000600236 TCF24Q7RTU0 167 aa8.45□□□□□ -1.06
HIF3A-217ENST00000600236 NARS2Q96I59 477 aaKnown RBP8.45□□□□□ -1.06
HIF3A-217ENST00000600236 DNAH7Q8WXX0 4024 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 IGHV3OR16-13A0A075B7E8 117 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 IGHV3-74A0A0B4J1X5 117 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 TRAV2A0A0B4J234 112 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 DFFBO76075 338 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 SLC25A6P12236 298 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 OPRK1P41145 380 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 RPL11P62913 178 aaKnown RBP8.44□□□□□ -1.06
HIF3A-217ENST00000600236 RAB32Q13637 225 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 NMSQ5H8A3 153 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 TMEM268Q5VZI3 342 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 FAM90A2PQ658T7 463 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 TOMM20LQ6UXN7 152 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 LYZL2Q7Z4W2 148 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 SELENOHQ8IZQ5 122 aaKnown RBP8.44□□□□□ -1.06
HIF3A-217ENST00000600236 GBGT1Q8N5D6 347 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 INO80EQ8NBZ0 244 aaPredicted RBP8.44□□□□□ -1.06
HIF3A-217ENST00000600236 OR4D5Q8NGN0 318 aa8.44□□□□□ -1.06
HIF3A-217ENST00000600236 RBPMSQ93062 196 aaKnown RBP8.44□□□□□ -1.06
HIF3A-217ENST00000600236 PUS1Q9Y606 427 aaKnown RBP eCLIP8.44□□□□□ -1.06
HIF3A-217ENST00000600236 RPS10-NUDT3A0A1W2PQS6 291 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 KANTRA0A1W2PQU2 76 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 DEDDO75618 318 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 TMEM50AO95807 157 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 CFDP00746 253 aaPredicted RBP8.43□□□□□ -1.06
HIF3A-217ENST00000600236 IGKV1-5P01602 117 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 NPPCP23582 126 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 HTR2BP41595 481 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 IZUMO4Q1ZYL8 232 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 CLLU1Q5K131 121 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 FAM219AQ8IW50 185 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 OR1S1Q8NH92 325 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 STOML3Q8TAV4 291 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 ST8SIA2Q92186 375 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 METTL26Q96S19 204 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 RARRES2Q99969 163 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 VSIRQ9H7M9 311 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 OR5AC2Q9NZP5 309 aa8.43□□□□□ -1.06
HIF3A-217ENST00000600236 TRAV30A0A087WSZ9 112 aa8.42□□□□□ -1.06
HIF3A-217ENST00000600236 CLN5O75503 358 aa8.42□□□□□ -1.06
HIF3A-217ENST00000600236 CA1P00915 261 aaPredicted RBP8.42□□□□□ -1.06
HIF3A-217ENST00000600236 MBPP02686 304 aaPredicted RBP8.42□□□□□ -1.06
HIF3A-217ENST00000600236 P0C879 139 aa8.42□□□□□ -1.06
HIF3A-217ENST00000600236 RNASE2P10153 161 aaKnown RBP8.42□□□□□ -1.06
HIF3A-217ENST00000600236 AP2S1P53680 142 aaPredicted RBP8.42□□□□□ -1.06
HIF3A-217ENST00000600236 EWSR1Q01844 656 aaKnown RBP eCLIP8.42□□□□□ -1.06
HIF3A-217ENST00000600236 SMCO1Q147U7 214 aa8.42□□□□□ -1.06
HIF3A-217ENST00000600236 ZNF124Q15973 351 aa8.42□□□□□ -1.06
HIF3A-217ENST00000600236 PVRIGQ6DKI7 326 aa8.42□□□□□ -1.06
HIF3A-217ENST00000600236 PHYHIPLQ96FC7 376 aa8.42□□□□□ -1.06
HIF3A-217ENST00000600236 GRAMD2BQ96HH9 432 aa8.42□□□□□ -1.06
HIF3A-217ENST00000600236 ZNF414Q96IQ9 312 aa8.42□□□□□ -1.06
HIF3A-217ENST00000600236 MS4A6AQ9H2W1 248 aa8.42□□□□□ -1.06
HIF3A-217ENST00000600236 C11orf1Q9H5F2 150 aa8.42□□□□□ -1.06
HIF3A-217ENST00000600236 ZFAND3Q9H8U3 227 aa8.42□□□□□ -1.06
HIF3A-217ENST00000600236 RABAC1Q9UI14 185 aa8.42□□□□□ -1.06
HIF3A-217ENST00000600236 DNAH1Q9P2D7 4330 aa8.42□□□□□ -1.06
HIF3A-217ENST00000600236 IGHV3-66A0A0C4DH42 116 aa8.41□□□□□ -1.06
HIF3A-217ENST00000600236 A0A1B0GU03 582 aa8.41□□□□□ -1.06
HIF3A-217ENST00000600236 LINC00862A6NCI5 91 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms