RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 K7EQG2 157 aa12.3□□□□□ -0.44
USHBP1-208ENST00000598309 WRBO00258 174 aa12.3□□□□□ -0.44
USHBP1-208ENST00000598309 RPL35AP18077 110 aaKnown RBP12.3□□□□□ -0.44
USHBP1-208ENST00000598309 NKX2-1P43699 371 aaPredicted RBP12.3□□□□□ -0.44
USHBP1-208ENST00000598309 AP2S1P53680 142 aaPredicted RBP12.3□□□□□ -0.44
USHBP1-208ENST00000598309 OR8G2PQ6IF36 304 aa12.3□□□□□ -0.44
USHBP1-208ENST00000598309 STXBP6Q8NFX7 210 aa12.3□□□□□ -0.44
USHBP1-208ENST00000598309 OR4D5Q8NGN0 318 aa12.3□□□□□ -0.44
USHBP1-208ENST00000598309 MITD1Q8WV92 249 aa12.3□□□□□ -0.44
USHBP1-208ENST00000598309 S100ZQ8WXG8 99 aa12.3□□□□□ -0.44
USHBP1-208ENST00000598309 RNF125Q96EQ8 232 aa12.3□□□□□ -0.44
USHBP1-208ENST00000598309 TRGV9Q99603 122 aa12.3□□□□□ -0.44
USHBP1-208ENST00000598309 PAIP2BQ9ULR5 123 aaKnown RBP12.3□□□□□ -0.44
USHBP1-208ENST00000598309 MPTX1A8MV57 137 aa12.29□□□□□ -0.44
USHBP1-208ENST00000598309 PRSS46E5RG02 174 aa12.29□□□□□ -0.44
USHBP1-208ENST00000598309 SPRY2O43597 315 aa12.29□□□□□ -0.44
USHBP1-208ENST00000598309 DEFB131AP59861 70 aa12.29□□□□□ -0.44
USHBP1-208ENST00000598309 ZNF124Q15973 351 aa12.29□□□□□ -0.44
USHBP1-208ENST00000598309 DEFB135Q30KP9 77 aa12.29□□□□□ -0.44
USHBP1-208ENST00000598309 THAP8Q8NA92 274 aa12.29□□□□□ -0.44
USHBP1-208ENST00000598309 DCANP1Q8TF63 244 aa12.29□□□□□ -0.44
USHBP1-208ENST00000598309 PFDN2Q9UHV9 154 aa12.29□□□□□ -0.44
USHBP1-208ENST00000598309 STRAPQ9Y3F4 350 aaKnown RBP12.29□□□□□ -0.44
USHBP1-208ENST00000598309 A6NHS1 94 aa12.28□□□□□ -0.44
USHBP1-208ENST00000598309 BUB3O43684 328 aa12.28□□□□□ -0.44
USHBP1-208ENST00000598309 TCRBP04435 133 aa12.28□□□□□ -0.44
USHBP1-208ENST00000598309 ZNF90Q03938 601 aa12.28□□□□□ -0.44
USHBP1-208ENST00000598309 SPANXN5Q5MJ07 72 aa12.28□□□□□ -0.44
USHBP1-208ENST00000598309 ZFAND6Q6FIF0 208 aa12.28□□□□□ -0.44
USHBP1-208ENST00000598309 FAM24BQ8N5W8 94 aa12.28□□□□□ -0.44
USHBP1-208ENST00000598309 RNF183Q96D59 192 aa12.28□□□□□ -0.44
USHBP1-208ENST00000598309 CSTL1Q9H114 145 aa12.28□□□□□ -0.44
USHBP1-208ENST00000598309 POLR2GP62487 172 aaKnown RBP eCLIP12.27□□□□□ -0.45
USHBP1-208ENST00000598309 IGKV1OR2-108A0A075B7D4 117 aa12.26□□□□□ -0.45
USHBP1-208ENST00000598309 SNRPGP15A8MWD9 76 aa12.26□□□□□ -0.45
USHBP1-208ENST00000598309 H3BP45 60 aa12.26□□□□□ -0.45
USHBP1-208ENST00000598309 SSSCA1O60232 199 aa12.26□□□□□ -0.45
USHBP1-208ENST00000598309 CFDP00746 253 aaPredicted RBP12.26□□□□□ -0.45
USHBP1-208ENST00000598309 IAH1Q2TAA2 248 aaPredicted RBP12.26□□□□□ -0.45
USHBP1-208ENST00000598309 LEMD1Q68G75 181 aa12.26□□□□□ -0.45
USHBP1-208ENST00000598309 SIGLEC15Q6ZMC9 328 aa12.26□□□□□ -0.45
USHBP1-208ENST00000598309 SMIM8Q96KF7 97 aa12.26□□□□□ -0.45
USHBP1-208ENST00000598309 PBDC1Q9BVG4 233 aa12.26□□□□□ -0.45
USHBP1-208ENST00000598309 SEPSECSQ9HD40 501 aaKnown RBP12.26□□□□□ -0.45
USHBP1-208ENST00000598309 NRN1Q9NPD7 142 aa12.26□□□□□ -0.45
USHBP1-208ENST00000598309 NUDT15Q9NV35 164 aa12.26□□□□□ -0.45
USHBP1-208ENST00000598309 TRAV6A0A075B6T7 132 aa12.25□□□□□ -0.45
USHBP1-208ENST00000598309 LYZP61626 148 aa12.25□□□□□ -0.45
USHBP1-208ENST00000598309 C1orf194Q5T5A4 169 aa12.25□□□□□ -0.45
USHBP1-208ENST00000598309 ACOT7LQ6ZUV0 252 aa12.25□□□□□ -0.45
USHBP1-208ENST00000598309 ZBTB8BQ8NAP8 495 aaPredicted RBP12.25□□□□□ -0.45
USHBP1-208ENST00000598309 GATAD1Q8WUU5 269 aa12.25□□□□□ -0.45
USHBP1-208ENST00000598309 RAB40CQ96S21 281 aa12.25□□□□□ -0.45
USHBP1-208ENST00000598309 PSENENQ9NZ42 101 aa12.25□□□□□ -0.45
USHBP1-208ENST00000598309 ZNF688P0C7X2 276 aa12.24□□□□□ -0.45
USHBP1-208ENST00000598309 ATF4P18848 351 aaPredicted RBP12.24□□□□□ -0.45
USHBP1-208ENST00000598309 TAS2R30P59541 319 aa12.24□□□□□ -0.45
USHBP1-208ENST00000598309 AKR1C1Q04828 323 aa12.24□□□□□ -0.45
USHBP1-208ENST00000598309 ASAH1Q13510 395 aa12.24□□□□□ -0.45
USHBP1-208ENST00000598309 OR2F1Q13607 317 aa12.24□□□□□ -0.45
USHBP1-208ENST00000598309 MZT2BQ6NZ67 158 aa12.24□□□□□ -0.45
USHBP1-208ENST00000598309 STHQ8IWL8 128 aa12.24□□□□□ -0.45
USHBP1-208ENST00000598309 ZNF431Q8TF32 576 aaPredicted RBP12.24□□□□□ -0.45
USHBP1-208ENST00000598309 WDR12Q9GZL7 423 aaKnown RBP12.24□□□□□ -0.45
USHBP1-208ENST00000598309 PTTG2Q9NZH5 202 aa12.24□□□□□ -0.45
USHBP1-208ENST00000598309 FBXL17Q9UF56 701 aa12.24□□□□□ -0.45
USHBP1-208ENST00000598309 TBC1D24Q9ULP9 559 aa12.24□□□□□ -0.45
USHBP1-208ENST00000598309 SLC45A2Q9UMX9 530 aa12.24□□□□□ -0.45
USHBP1-208ENST00000598309 FAM240BA0A1B0GVZ2 78 aa12.23□□□□□ -0.45
USHBP1-208ENST00000598309 TSC22D2O75157 780 aa12.23□□□□□ -0.45
USHBP1-208ENST00000598309 SNRPD3P62318 126 aaKnown RBP12.23□□□□□ -0.45
USHBP1-208ENST00000598309 TMEM14EPQ6UXP3 125 aa12.23□□□□□ -0.45
USHBP1-208ENST00000598309 TMEM144Q7Z5S9 345 aa12.23□□□□□ -0.45
USHBP1-208ENST00000598309 TRPT1Q86TN4 253 aaKnown RBP12.23□□□□□ -0.45
USHBP1-208ENST00000598309 RCL1Q9Y2P8 373 aaKnown RBP12.23□□□□□ -0.45
USHBP1-208ENST00000598309 PMS2P5A8MQ11 134 aa12.22□□□□□ -0.45
USHBP1-208ENST00000598309 SCGB1D2O95969 90 aa12.22□□□□□ -0.45
USHBP1-208ENST00000598309 CA1P00915 261 aaPredicted RBP12.22□□□□□ -0.45
USHBP1-208ENST00000598309 H2AFB2P0C5Z0 115 aa12.22□□□□□ -0.45
USHBP1-208ENST00000598309 SPP1P10451 314 aa12.22□□□□□ -0.45
USHBP1-208ENST00000598309 PAX9P55771 341 aa12.22□□□□□ -0.45
USHBP1-208ENST00000598309 ZNF846Q147U1 533 aa12.22□□□□□ -0.45
USHBP1-208ENST00000598309 TMEM41BQ5BJD5 291 aa12.22□□□□□ -0.45
USHBP1-208ENST00000598309 MORN3Q6PF18 240 aaPredicted RBP12.22□□□□□ -0.45
USHBP1-208ENST00000598309 TMEM217Q8N7C4 229 aa12.22□□□□□ -0.45
USHBP1-208ENST00000598309 GSKIPQ9P0R6 139 aa12.22□□□□□ -0.45
USHBP1-208ENST00000598309 A0A0J9YWU9 116 aa12.21□□□□□ -0.45
USHBP1-208ENST00000598309 FNDC10F2Z333 226 aa12.21□□□□□ -0.45
USHBP1-208ENST00000598309 S100A7P31151 101 aa12.21□□□□□ -0.45
USHBP1-208ENST00000598309 DLK1P80370 383 aa12.21□□□□□ -0.45
USHBP1-208ENST00000598309 PSMG4Q5JS54 123 aa12.21□□□□□ -0.45
USHBP1-208ENST00000598309 BPIFCQ8NFQ6 507 aa12.21□□□□□ -0.45
USHBP1-208ENST00000598309 PPP1R14BQ96C90 147 aa12.21□□□□□ -0.45
USHBP1-208ENST00000598309 SEC22CQ9BRL7 303 aa12.21□□□□□ -0.45
USHBP1-208ENST00000598309 KNCNA6PVL3 124 aa12.2□□□□□ -0.46
USHBP1-208ENST00000598309 CCSO14618 274 aa12.2□□□□□ -0.46
USHBP1-208ENST00000598309 UPK1BO75841 260 aa12.2□□□□□ -0.46
USHBP1-208ENST00000598309 MBPP02686 304 aaPredicted RBP12.2□□□□□ -0.46
USHBP1-208ENST00000598309 C12orf45Q8N5I9 185 aaPredicted RBP12.2□□□□□ -0.46
USHBP1-208ENST00000598309 OR10P1Q8NGE3 313 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms