RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TMEM128Q5BJH2 165 aa9.07□□□□□ -0.96
TRIM28-212ENST00000597995 CENPSQ8N2Z9 138 aa9.07□□□□□ -0.96
TRIM28-212ENST00000597995 LRTM2Q8N967 370 aa9.07□□□□□ -0.96
TRIM28-212ENST00000597995 DTD1Q8TEA8 209 aa9.07□□□□□ -0.96
TRIM28-212ENST00000597995 NPIPB3Q92617 1050 aa9.07□□□□□ -0.96
TRIM28-212ENST00000597995 GRAMD2BQ96HH9 432 aa9.07□□□□□ -0.96
TRIM28-212ENST00000597995 AGRNO00468 2067 aa9.06□□□□□ -0.96
TRIM28-212ENST00000597995 PIGBOS1A0A0B4J2F0 54 aa9.06□□□□□ -0.96
TRIM28-212ENST00000597995 K7EQG2 157 aa9.06□□□□□ -0.96
TRIM28-212ENST00000597995 SCGB2A1O75556 95 aa9.06□□□□□ -0.96
TRIM28-212ENST00000597995 ANXA3P12429 323 aa9.06□□□□□ -0.96
TRIM28-212ENST00000597995 OR10J1P30954 320 aa9.06□□□□□ -0.96
TRIM28-212ENST00000597995 P2RY1P47900 373 aa9.06□□□□□ -0.96
TRIM28-212ENST00000597995 YPEL3P61236 119 aaPredicted RBP9.06□□□□□ -0.96
TRIM28-212ENST00000597995 SRPXP78539 464 aa9.06□□□□□ -0.96
TRIM28-212ENST00000597995 USF2Q15853 346 aaPredicted RBP9.06□□□□□ -0.96
TRIM28-212ENST00000597995 OR1S2Q8NGQ3 325 aa9.06□□□□□ -0.96
TRIM28-212ENST00000597995 DEDD2Q8WXF8 326 aa9.06□□□□□ -0.96
TRIM28-212ENST00000597995 METTL26Q96S19 204 aa9.06□□□□□ -0.96
TRIM28-212ENST00000597995 SLC25A21Q9BQT8 299 aaPredicted RBP9.06□□□□□ -0.96
TRIM28-212ENST00000597995 RNF126Q9BV68 326 aa9.06□□□□□ -0.96
TRIM28-212ENST00000597995 RABAC1Q9UI14 185 aa9.06□□□□□ -0.96
TRIM28-212ENST00000597995 U3KQ87 197 aa9.06□□□□□ -0.96
TRIM28-212ENST00000597995 IGHV4-4A0A075B6R2 117 aa9.05□□□□□ -0.96
TRIM28-212ENST00000597995 DUXBA0A1W2PPF3 345 aa9.05□□□□□ -0.96
TRIM28-212ENST00000597995 SFT2D2O95562 160 aa9.05□□□□□ -0.96
TRIM28-212ENST00000597995 IFNA10P01566 189 aa9.05□□□□□ -0.96
TRIM28-212ENST00000597995 Q6ZTC4 211 aa9.05□□□□□ -0.96
TRIM28-212ENST00000597995 OR1S1Q8NH92 325 aa9.05□□□□□ -0.96
TRIM28-212ENST00000597995 ACY3Q96HD9 319 aa9.05□□□□□ -0.96
TRIM28-212ENST00000597995 X6R8D5 127 aa9.05□□□□□ -0.96
TRIM28-212ENST00000597995 PCLOQ9Y6V0 5065 aa9.05□□□□□ -0.96
TRIM28-212ENST00000597995 IGKV1D-37A0A075B6S9 117 aa9.04□□□□□ -0.96
TRIM28-212ENST00000597995 ELOA3CA0A087WX78 387 aaPredicted RBP9.04□□□□□ -0.96
TRIM28-212ENST00000597995 VAMP1P23763 118 aa9.04□□□□□ -0.96
TRIM28-212ENST00000597995 SPANXN2Q5MJ10 180 aa9.04□□□□□ -0.96
TRIM28-212ENST00000597995 ETFRF1Q6IPR1 90 aa9.04□□□□□ -0.96
TRIM28-212ENST00000597995 C16orf54Q6UWD8 224 aa9.04□□□□□ -0.96
TRIM28-212ENST00000597995 CSNK1G2-AS1Q8NCQ2 148 aa9.04□□□□□ -0.96
TRIM28-212ENST00000597995 DCANP1Q8TF63 244 aa9.04□□□□□ -0.96
TRIM28-212ENST00000597995 Q8WTZ3 238 aa9.04□□□□□ -0.96
TRIM28-212ENST00000597995 GLMPQ8WWB7 406 aa9.04□□□□□ -0.96
TRIM28-212ENST00000597995 FLVCR2Q9UPI3 526 aa9.04□□□□□ -0.96
TRIM28-212ENST00000597995 A0A1B0GVY2 172 aa9.03□□□□□ -0.96
TRIM28-212ENST00000597995 TOMM40O96008 361 aa9.03□□□□□ -0.96
TRIM28-212ENST00000597995 IL4P05112 153 aa9.03□□□□□ -0.96
TRIM28-212ENST00000597995 HNRNPCP07910 306 aaKnown RBP eCLIP9.03□□□□□ -0.96
TRIM28-212ENST00000597995 MED14OSP0DP75 135 aa9.03□□□□□ -0.96
TRIM28-212ENST00000597995 IAPPP10997 89 aa9.03□□□□□ -0.96
TRIM28-212ENST00000597995 PSG1P11464 419 aa9.03□□□□□ -0.96
TRIM28-212ENST00000597995 SLC25A6P12236 298 aa9.03□□□□□ -0.96
TRIM28-212ENST00000597995 C4BPBP20851 252 aa9.03□□□□□ -0.96
TRIM28-212ENST00000597995 BTCP35070 178 aa9.03□□□□□ -0.96
TRIM28-212ENST00000597995 INPP1P49441 399 aa9.03□□□□□ -0.96
TRIM28-212ENST00000597995 GAMTQ14353 236 aa9.03□□□□□ -0.96
TRIM28-212ENST00000597995 NOXA1Q86UR1 476 aa9.03□□□□□ -0.96
TRIM28-212ENST00000597995 STXBP6Q8NFX7 210 aa9.03□□□□□ -0.96
TRIM28-212ENST00000597995 NARS2Q96I59 477 aaKnown RBP9.03□□□□□ -0.96
TRIM28-212ENST00000597995 TBC1D24Q9ULP9 559 aa9.03□□□□□ -0.96
TRIM28-212ENST00000597995 LINC00854A0A1B0GVQ3 168 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 C9orf170A2RU37 121 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 KNCNA6PVL3 124 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 BUB3O43684 328 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 NDUFB6O95139 128 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 AMBPP02760 352 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 HOXB5P09067 269 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 ZNF688P0C7X2 276 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 RD3LP0DJH9 198 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 P0DMU3 169 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 FAM231AP0DMU4 169 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 FAM231CP0DMU5 169 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 GPX4P36969 197 aaPredicted RBP9.02□□□□□ -0.97
TRIM28-212ENST00000597995 EIF2B2P49770 351 aaKnown RBP9.02□□□□□ -0.97
TRIM28-212ENST00000597995 ATP5IP56385 69 aaPredicted RBP9.02□□□□□ -0.97
TRIM28-212ENST00000597995 ZNF90Q03938 601 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 ACTL10Q5JWF8 245 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 GGNBP1Q5YKI7 109 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 POM121L12Q8N7R1 296 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 OR51G1Q8NGK1 321 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 MAGT1Q9H0U3 335 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 TMED3Q9Y3Q3 217 aa9.02□□□□□ -0.97
TRIM28-212ENST00000597995 FAT2Q9NYQ8 4349 aa9.01□□□□□ -0.97
TRIM28-212ENST00000597995 IGKV1OR2-108A0A075B7D4 117 aa9.01□□□□□ -0.97
TRIM28-212ENST00000597995 DEFB131BA0A096LNP1 70 aa9.01□□□□□ -0.97
TRIM28-212ENST00000597995 FAM90A26D6RGX4 464 aa9.01□□□□□ -0.97
TRIM28-212ENST00000597995 PRSS46E5RG02 174 aa9.01□□□□□ -0.97
TRIM28-212ENST00000597995 ADAP1O75689 374 aa9.01□□□□□ -0.97
TRIM28-212ENST00000597995 AP2S1P53680 142 aaPredicted RBP9.01□□□□□ -0.97
TRIM28-212ENST00000597995 C12orf74Q32Q52 190 aa9.01□□□□□ -0.97
TRIM28-212ENST00000597995 RAB40CQ96S21 281 aa9.01□□□□□ -0.97
TRIM28-212ENST00000597995 C1QTNF4Q9BXJ3 329 aa9.01□□□□□ -0.97
TRIM28-212ENST00000597995 PKHD1P08F94 4074 aa9□□□□□ -0.97
TRIM28-212ENST00000597995 DNAH2Q9P225 4427 aa9□□□□□ -0.97
TRIM28-212ENST00000597995 DNAH17Q9UFH2 4485 aa9□□□□□ -0.97
TRIM28-212ENST00000597995 HELTA6NFD8 242 aa9□□□□□ -0.97
TRIM28-212ENST00000597995 NAP1L6A6NFF2 107 aa9□□□□□ -0.97
TRIM28-212ENST00000597995 SYNGR2O43760 224 aa9□□□□□ -0.97
TRIM28-212ENST00000597995 IL7P13232 177 aa9□□□□□ -0.97
TRIM28-212ENST00000597995 UBE2MP61081 183 aaKnown RBP9□□□□□ -0.97
TRIM28-212ENST00000597995 NUTF2P61970 127 aaKnown RBP9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms