RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 COX7A2P2O60397 106 aa11.82□□□□□ -0.52
TRIM28-209ENST00000597423 IGHV3-11P01762 117 aa11.82□□□□□ -0.52
TRIM28-209ENST00000597423 RPLP1P05386 114 aaKnown RBP11.82□□□□□ -0.52
TRIM28-209ENST00000597423 PSG1P11464 419 aa11.82□□□□□ -0.52
TRIM28-209ENST00000597423 ARL3P36405 182 aa11.82□□□□□ -0.52
TRIM28-209ENST00000597423 CDX1P47902 265 aaPredicted RBP11.82□□□□□ -0.52
TRIM28-209ENST00000597423 RHOBP62745 196 aa11.82□□□□□ -0.52
TRIM28-209ENST00000597423 DEFA5Q01523 94 aa11.82□□□□□ -0.52
TRIM28-209ENST00000597423 MYOZ3Q8TDC0 251 aa11.82□□□□□ -0.52
TRIM28-209ENST00000597423 RPRMQ9NS64 109 aa11.82□□□□□ -0.52
TRIM28-209ENST00000597423 RFNGQ9Y644 331 aa11.82□□□□□ -0.52
TRIM28-209ENST00000597423 HAX1O00165 279 aa11.81□□□□□ -0.52
TRIM28-209ENST00000597423 GGCTO75223 188 aaKnown RBP11.81□□□□□ -0.52
TRIM28-209ENST00000597423 H2AFB1P0C5Y9 115 aa11.81□□□□□ -0.52
TRIM28-209ENST00000597423 GATA2P23769 480 aaPredicted RBP11.81□□□□□ -0.52
TRIM28-209ENST00000597423 PLP1P60201 277 aa11.81□□□□□ -0.52
TRIM28-209ENST00000597423 FOXL1Q12952 345 aa11.81□□□□□ -0.52
TRIM28-209ENST00000597423 KIAA0141Q14154 515 aaPredicted RBP11.81□□□□□ -0.52
TRIM28-209ENST00000597423 CLLU1Q5K131 121 aa11.81□□□□□ -0.52
TRIM28-209ENST00000597423 C10orf113Q5VZT2 155 aa11.81□□□□□ -0.52
TRIM28-209ENST00000597423 CCDC140Q96MF4 163 aa11.81□□□□□ -0.52
TRIM28-209ENST00000597423 ANKRD34BA5PLL1 514 aa11.8□□□□□ -0.52
TRIM28-209ENST00000597423 YIF1AO95070 293 aa11.8□□□□□ -0.52
TRIM28-209ENST00000597423 OR2C1O95371 312 aa11.8□□□□□ -0.52
TRIM28-209ENST00000597423 HBE1P02100 147 aa11.8□□□□□ -0.52
TRIM28-209ENST00000597423 LGALS1P09382 135 aaKnown RBP11.8□□□□□ -0.52
TRIM28-209ENST00000597423 OR5G3P0C626 314 aa11.8□□□□□ -0.52
TRIM28-209ENST00000597423 ORM2P19652 201 aa11.8□□□□□ -0.52
TRIM28-209ENST00000597423 C10orf99Q6UWK7 81 aa11.8□□□□□ -0.52
TRIM28-209ENST00000597423 LCNL1Q6ZST4 164 aa11.8□□□□□ -0.52
TRIM28-209ENST00000597423 OR1B1Q8NGR6 318 aa11.8□□□□□ -0.52
TRIM28-209ENST00000597423 MRPL32Q9BYC8 188 aaKnown RBP11.8□□□□□ -0.52
TRIM28-209ENST00000597423 PLA2G2EQ9NZK7 142 aa11.8□□□□□ -0.52
TRIM28-209ENST00000597423 NSD1Q96L73 2696 aaPredicted RBP11.8□□□□□ -0.52
TRIM28-209ENST00000597423 CTXND1A0A1B0GTU2 59 aa11.79□□□□□ -0.52
TRIM28-209ENST00000597423 BMPR1BO00238 502 aa11.79□□□□□ -0.52
TRIM28-209ENST00000597423 HSPB1P04792 205 aaKnown RBP11.79□□□□□ -0.52
TRIM28-209ENST00000597423 IL4P05112 153 aa11.79□□□□□ -0.52
TRIM28-209ENST00000597423 TAS2R45P59539 299 aa11.79□□□□□ -0.52
TRIM28-209ENST00000597423 LYZP61626 148 aa11.79□□□□□ -0.52
TRIM28-209ENST00000597423 FAM106AQ4KMX7 169 aa11.79□□□□□ -0.52
TRIM28-209ENST00000597423 KHDC1LQ5JSQ8 128 aa11.79□□□□□ -0.52
TRIM28-209ENST00000597423 FAM122CQ6P4D5 195 aa11.79□□□□□ -0.52
TRIM28-209ENST00000597423 RPP25LQ8N5L8 163 aaKnown RBP11.79□□□□□ -0.52
TRIM28-209ENST00000597423 SFT2D1Q8WV19 159 aa11.79□□□□□ -0.52
TRIM28-209ENST00000597423 CHRDL1Q9BU40 450 aa11.79□□□□□ -0.52
TRIM28-209ENST00000597423 HIGD1AQ9Y241 93 aa11.79□□□□□ -0.52
TRIM28-209ENST00000597423 PUS1Q9Y606 427 aaKnown RBP eCLIP11.79□□□□□ -0.52
TRIM28-209ENST00000597423 FN1P02751 2386 aaKnown RBP11.79□□□□□ -0.52
TRIM28-209ENST00000597423 WI2-2373I1.2A0A1W2PRP0 233 aa11.78□□□□□ -0.52
TRIM28-209ENST00000597423 SEC14L6B5MCN3 397 aa11.78□□□□□ -0.52
TRIM28-209ENST00000597423 NDUFA4O00483 81 aa11.78□□□□□ -0.52
TRIM28-209ENST00000597423 ADMP35318 185 aa11.78□□□□□ -0.52
TRIM28-209ENST00000597423 CDC34P49427 236 aaPredicted RBP11.78□□□□□ -0.52
TRIM28-209ENST00000597423 PROK1P58294 105 aa11.78□□□□□ -0.52
TRIM28-209ENST00000597423 FAM78BQ5VT40 261 aa11.78□□□□□ -0.52
TRIM28-209ENST00000597423 WIPF2Q8TF74 440 aaPredicted RBP11.78□□□□□ -0.52
TRIM28-209ENST00000597423 MBD3L1Q8WWY6 194 aa11.78□□□□□ -0.52
TRIM28-209ENST00000597423 RNF125Q96EQ8 232 aa11.78□□□□□ -0.52
TRIM28-209ENST00000597423 PBDC1Q9BVG4 233 aa11.78□□□□□ -0.52
TRIM28-209ENST00000597423 VSIRQ9H7M9 311 aa11.78□□□□□ -0.52
TRIM28-209ENST00000597423 TECRQ9NZ01 308 aaKnown RBP11.78□□□□□ -0.52
TRIM28-209ENST00000597423 FUT9Q9Y231 359 aa11.78□□□□□ -0.52
TRIM28-209ENST00000597423 TSSC4Q9Y5U2 329 aaPredicted RBP11.78□□□□□ -0.52
TRIM28-209ENST00000597423 TRAV1-1A0A0B4J248 108 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 NUDT19A8MXV4 375 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 PPP5D1E7EU14 171 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 NMBP08949 121 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 ZP3P21754 424 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 FHITP49789 147 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 NDUFA5Q16718 116 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 TOMM20LQ6UXN7 152 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 GPHB5Q86YW7 130 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 STXBP6Q8NFX7 210 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 C4orf3Q8WVX3 66 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 DPF1Q92782 380 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 RAB24Q969Q5 203 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 RCC1LQ96I51 464 aaKnown RBP11.77□□□□□ -0.53
TRIM28-209ENST00000597423 NARS2Q96I59 477 aaKnown RBP11.77□□□□□ -0.53
TRIM28-209ENST00000597423 OR5B12Q96R08 314 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 DOK5Q9P104 306 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 RABAC1Q9UI14 185 aa11.77□□□□□ -0.53
TRIM28-209ENST00000597423 RPEL1Q2QD12 228 aa11.76□□□□□ -0.53
TRIM28-209ENST00000597423 GCSAMLQ5JQS6 135 aa11.76□□□□□ -0.53
TRIM28-209ENST00000597423 LINC00305Q7Z4B0 112 aa11.76□□□□□ -0.53
TRIM28-209ENST00000597423 TMEM37Q8WXS4 190 aa11.76□□□□□ -0.53
TRIM28-209ENST00000597423 METTL26Q96S19 204 aa11.76□□□□□ -0.53
TRIM28-209ENST00000597423 HRH4Q9H3N8 390 aa11.76□□□□□ -0.53
TRIM28-209ENST00000597423 MRPL27Q9P0M9 148 aaKnown RBP11.76□□□□□ -0.53
TRIM28-209ENST00000597423 MAP1LC3B2A6NCE7 125 aa11.75□□□□□ -0.53
TRIM28-209ENST00000597423 CXorf1O96002 111 aa11.75□□□□□ -0.53
TRIM28-209ENST00000597423 C8orf88P0DMB2 117 aa11.75□□□□□ -0.53
TRIM28-209ENST00000597423 CD28P10747 220 aa11.75□□□□□ -0.53
TRIM28-209ENST00000597423 NPPCP23582 126 aa11.75□□□□□ -0.53
TRIM28-209ENST00000597423 PPT1P50897 306 aa11.75□□□□□ -0.53
TRIM28-209ENST00000597423 TCTEX1D4Q5JR98 221 aa11.75□□□□□ -0.53
TRIM28-209ENST00000597423 LCN15Q6UWW0 184 aa11.75□□□□□ -0.53
TRIM28-209ENST00000597423 PATE2Q6UY27 113 aa11.75□□□□□ -0.53
TRIM28-209ENST00000597423 MAP1LC3BQ9GZQ8 125 aa11.75□□□□□ -0.53
TRIM28-209ENST00000597423 SLC25A22Q9H936 323 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms