RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 RD3LP0DJH9 198 aa9.52□□□□□ -0.89
LIG1-212ENST00000596549 ZNF90Q03938 601 aa9.52□□□□□ -0.89
LIG1-212ENST00000596549 SPANXN2Q5MJ10 180 aa9.52□□□□□ -0.89
LIG1-212ENST00000596549 STHQ8IWL8 128 aa9.52□□□□□ -0.89
LIG1-212ENST00000596549 OR11H2Q8NH07 326 aa9.52□□□□□ -0.89
LIG1-212ENST00000596549 RNF125Q96EQ8 232 aa9.52□□□□□ -0.89
LIG1-212ENST00000596549 RARRES2Q99969 163 aa9.52□□□□□ -0.89
LIG1-212ENST00000596549 KRTAP17-1Q9BYP8 105 aa9.52□□□□□ -0.89
LIG1-212ENST00000596549 C11orf68Q9H3H3 251 aaKnown RBP9.52□□□□□ -0.89
LIG1-212ENST00000596549 TMED3Q9Y3Q3 217 aa9.52□□□□□ -0.89
LIG1-212ENST00000596549 PIGBOS1A0A0B4J2F0 54 aa9.51□□□□□ -0.89
LIG1-212ENST00000596549 HELTA6NFD8 242 aa9.51□□□□□ -0.89
LIG1-212ENST00000596549 FAM90A26D6RGX4 464 aa9.51□□□□□ -0.89
LIG1-212ENST00000596549 NDUFB6O95139 128 aa9.51□□□□□ -0.89
LIG1-212ENST00000596549 HOXB5P09067 269 aa9.51□□□□□ -0.89
LIG1-212ENST00000596549 DHRS2Q13268 280 aa9.51□□□□□ -0.89
LIG1-212ENST00000596549 GGNBP1Q5YKI7 109 aa9.51□□□□□ -0.89
LIG1-212ENST00000596549 SLC35E1Q96K37 410 aa9.51□□□□□ -0.89
LIG1-212ENST00000596549 MAGT1Q9H0U3 335 aa9.51□□□□□ -0.89
LIG1-212ENST00000596549 FLVCR2Q9UPI3 526 aa9.51□□□□□ -0.89
LIG1-212ENST00000596549 C9orf170A2RU37 121 aa9.5□□□□□ -0.89
LIG1-212ENST00000596549 ZFP92A6NM28 416 aa9.5□□□□□ -0.89
LIG1-212ENST00000596549 DEFB4AO15263 64 aa9.5□□□□□ -0.89
LIG1-212ENST00000596549 ADAP1O75689 374 aa9.5□□□□□ -0.89
LIG1-212ENST00000596549 GPX4P36969 197 aaPredicted RBP9.5□□□□□ -0.89
LIG1-212ENST00000596549 EIF2B2P49770 351 aaKnown RBP9.5□□□□□ -0.89
LIG1-212ENST00000596549 ATP5IP56385 69 aaPredicted RBP9.5□□□□□ -0.89
LIG1-212ENST00000596549 PSMG4Q5JS54 123 aa9.5□□□□□ -0.89
LIG1-212ENST00000596549 ACTL10Q5JWF8 245 aa9.5□□□□□ -0.89
LIG1-212ENST00000596549 CEMP1Q6PRD7 247 aaPredicted RBP9.5□□□□□ -0.89
LIG1-212ENST00000596549 SIGLEC15Q6ZMC9 328 aa9.5□□□□□ -0.89
LIG1-212ENST00000596549 TMEM217Q8N7C4 229 aa9.5□□□□□ -0.89
LIG1-212ENST00000596549 Q8NAQ8 132 aa9.5□□□□□ -0.89
LIG1-212ENST00000596549 PBDC1Q9BVG4 233 aa9.5□□□□□ -0.89
LIG1-212ENST00000596549 NRN1Q9NPD7 142 aa9.5□□□□□ -0.89
LIG1-212ENST00000596549 H3BP45 60 aa9.49□□□□□ -0.89
LIG1-212ENST00000596549 WRBO00258 174 aa9.49□□□□□ -0.89
LIG1-212ENST00000596549 SYNGR2O43760 224 aa9.49□□□□□ -0.89
LIG1-212ENST00000596549 SPP1P10451 314 aa9.49□□□□□ -0.89
LIG1-212ENST00000596549 UBE2MP61081 183 aaKnown RBP9.49□□□□□ -0.89
LIG1-212ENST00000596549 LYZP61626 148 aa9.49□□□□□ -0.89
LIG1-212ENST00000596549 TRIQKQ629K1 86 aa9.49□□□□□ -0.89
LIG1-212ENST00000596549 OR8G2PQ6IF36 304 aa9.49□□□□□ -0.89
LIG1-212ENST00000596549 GSG1LQ6UXU4 331 aa9.49□□□□□ -0.89
LIG1-212ENST00000596549 THAP8Q8NA92 274 aa9.49□□□□□ -0.89
LIG1-212ENST00000596549 LINC00854A0A1B0GVQ3 168 aa9.48□□□□□ -0.89
LIG1-212ENST00000596549 NAP1L6A6NFF2 107 aa9.48□□□□□ -0.89
LIG1-212ENST00000596549 SOCS3O14543 225 aa9.48□□□□□ -0.89
LIG1-212ENST00000596549 MED6O75586 246 aa9.48□□□□□ -0.89
LIG1-212ENST00000596549 IL7P13232 177 aa9.48□□□□□ -0.89
LIG1-212ENST00000596549 AP2S1P53680 142 aaPredicted RBP9.48□□□□□ -0.89
LIG1-212ENST00000596549 NANOS2P60321 138 aaKnown RBP9.48□□□□□ -0.89
LIG1-212ENST00000596549 RAB11AP62491 216 aa9.48□□□□□ -0.89
LIG1-212ENST00000596549 OR2F1Q13607 317 aa9.48□□□□□ -0.89
LIG1-212ENST00000596549 MORN3Q6PF18 240 aaPredicted RBP9.48□□□□□ -0.89
LIG1-212ENST00000596549 CSNK1G2-AS1Q8NCQ2 148 aa9.48□□□□□ -0.89
LIG1-212ENST00000596549 OR4D5Q8NGN0 318 aa9.48□□□□□ -0.89
LIG1-212ENST00000596549 PHLDA1Q8WV24 401 aaPredicted RBP9.48□□□□□ -0.89
LIG1-212ENST00000596549 RAB40CQ96S21 281 aa9.48□□□□□ -0.89
LIG1-212ENST00000596549 TRGV9Q99603 122 aa9.48□□□□□ -0.89
LIG1-212ENST00000596549 WDR12Q9GZL7 423 aaKnown RBP9.48□□□□□ -0.89
LIG1-212ENST00000596549 PAIP2BQ9ULR5 123 aaKnown RBP9.48□□□□□ -0.89
LIG1-212ENST00000596549 X6R8D5 127 aa9.48□□□□□ -0.89
LIG1-212ENST00000596549 BIRC6Q9NR09 4857 aa9.47□□□□□ -0.89
LIG1-212ENST00000596549 IGHV4-28A0A0C4DH34 117 aa9.47□□□□□ -0.89
LIG1-212ENST00000596549 ZNF705EA8MWA4 302 aaPredicted RBP9.47□□□□□ -0.89
LIG1-212ENST00000596549 OR4E1P0C645 316 aa9.47□□□□□ -0.89
LIG1-212ENST00000596549 ANXA7P20073 488 aaKnown RBP9.47□□□□□ -0.89
LIG1-212ENST00000596549 INPP1P49441 399 aa9.47□□□□□ -0.89
LIG1-212ENST00000596549 DEFB1P60022 68 aa9.47□□□□□ -0.89
LIG1-212ENST00000596549 GDF5OSQ5U4N7 250 aa9.47□□□□□ -0.89
LIG1-212ENST00000596549 ACOT7LQ6ZUV0 252 aa9.47□□□□□ -0.89
LIG1-212ENST00000596549 CIB3Q96Q77 187 aaPredicted RBP9.47□□□□□ -0.89
LIG1-212ENST00000596549 CLEC5AQ9NY25 188 aa9.47□□□□□ -0.89
LIG1-212ENST00000596549 PMS2P5A8MQ11 134 aa9.46□□□□□ -0.9
LIG1-212ENST00000596549 LY6G6CO95867 125 aa9.46□□□□□ -0.9
LIG1-212ENST00000596549 RBMY1A1P0DJD3 496 aaKnown RBP9.46□□□□□ -0.9
LIG1-212ENST00000596549 RBMY1CP0DJD4 496 aa9.46□□□□□ -0.9
LIG1-212ENST00000596549 NUP62P37198 522 aaPredicted RBP9.46□□□□□ -0.9
LIG1-212ENST00000596549 POLR2GP62487 172 aaKnown RBP eCLIP9.46□□□□□ -0.9
LIG1-212ENST00000596549 ID3Q02535 119 aa9.46□□□□□ -0.9
LIG1-212ENST00000596549 RBMY1FQ15415 496 aaKnown RBP9.46□□□□□ -0.9
LIG1-212ENST00000596549 TMEM41BQ5BJD5 291 aa9.46□□□□□ -0.9
LIG1-212ENST00000596549 SPANXN5Q5MJ07 72 aa9.46□□□□□ -0.9
LIG1-212ENST00000596549 TMEM182Q6ZP80 229 aaPredicted RBP9.46□□□□□ -0.9
LIG1-212ENST00000596549 C11orf45Q8TAV5 145 aa9.46□□□□□ -0.9
LIG1-212ENST00000596549 SEPSECSQ9HD40 501 aaKnown RBP9.46□□□□□ -0.9
LIG1-212ENST00000596549 H3BMM0 161 aa9.45□□□□□ -0.9
LIG1-212ENST00000596549 CCNKO75909 580 aa9.45□□□□□ -0.9
LIG1-212ENST00000596549 HLA-DRB4P13762 266 aa9.45□□□□□ -0.9
LIG1-212ENST00000596549 GATA2P23769 480 aaPredicted RBP9.45□□□□□ -0.9
LIG1-212ENST00000596549 SNRPD3P62318 126 aaKnown RBP9.45□□□□□ -0.9
LIG1-212ENST00000596549 COQ8AQ8NI60 647 aa9.45□□□□□ -0.9
LIG1-212ENST00000596549 C17orf77Q96MU5 243 aa9.45□□□□□ -0.9
LIG1-212ENST00000596549 C7orf50Q9BRJ6 194 aaKnown RBP9.45□□□□□ -0.9
LIG1-212ENST00000596549 FBXL17Q9UF56 701 aa9.45□□□□□ -0.9
LIG1-212ENST00000596549 KLK5Q9Y337 293 aaPredicted RBP9.45□□□□□ -0.9
LIG1-212ENST00000596549 HLA-DRB4X5D2U9 266 aa9.45□□□□□ -0.9
LIG1-212ENST00000596549 PLA2G10O15496 165 aa9.44□□□□□ -0.9
LIG1-212ENST00000596549 SSSCA1O60232 199 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms