RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 RPL35AP18077 110 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-204ENST00000594862 C16orf54Q6UWD8 224 aa13.11□□□□□ -0.31
SHKBP1-204ENST00000594862 LILRB2Q8N423 598 aa13.11□□□□□ -0.31
SHKBP1-204ENST00000594862 GATAD1Q8WUU5 269 aa13.11□□□□□ -0.31
SHKBP1-204ENST00000594862 RNF183Q96D59 192 aa13.11□□□□□ -0.31
SHKBP1-204ENST00000594862 CSTL1Q9H114 145 aa13.11□□□□□ -0.31
SHKBP1-204ENST00000594862 PAIP2BQ9ULR5 123 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-204ENST00000594862 NKX2-1P43699 371 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-204ENST00000594862 USF2Q15853 346 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-204ENST00000594862 DEFB135Q30KP9 77 aa13.1□□□□□ -0.31
SHKBP1-204ENST00000594862 ZFAND6Q6FIF0 208 aa13.1□□□□□ -0.31
SHKBP1-204ENST00000594862 TMEM217Q8N7C4 229 aa13.1□□□□□ -0.31
SHKBP1-204ENST00000594862 GLMPQ8WWB7 406 aa13.1□□□□□ -0.31
SHKBP1-204ENST00000594862 S100ZQ8WXG8 99 aa13.1□□□□□ -0.31
SHKBP1-204ENST00000594862 TRGV9Q99603 122 aa13.1□□□□□ -0.31
SHKBP1-204ENST00000594862 MAGT1Q9H0U3 335 aa13.1□□□□□ -0.31
SHKBP1-204ENST00000594862 C20orf85Q9H1P6 137 aa13.1□□□□□ -0.31
SHKBP1-204ENST00000594862 SEPSECSQ9HD40 501 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-204ENST00000594862 FLVCR2Q9UPI3 526 aa13.1□□□□□ -0.31
SHKBP1-204ENST00000594862 STRAPQ9Y3F4 350 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-204ENST00000594862 ADAP1O75689 374 aa13.09□□□□□ -0.31
SHKBP1-204ENST00000594862 ANXA7P20073 488 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-204ENST00000594862 S100A7P31151 101 aa13.09□□□□□ -0.31
SHKBP1-204ENST00000594862 DEFB131AP59861 70 aa13.09□□□□□ -0.31
SHKBP1-204ENST00000594862 ID3Q02535 119 aa13.09□□□□□ -0.31
SHKBP1-204ENST00000594862 TMEM41BQ5BJD5 291 aa13.09□□□□□ -0.31
SHKBP1-204ENST00000594862 MITD1Q8WV92 249 aa13.09□□□□□ -0.31
SHKBP1-204ENST00000594862 FBXL17Q9UF56 701 aa13.09□□□□□ -0.31
SHKBP1-204ENST00000594862 DYNC2H1Q8NCM8 4307 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-204ENST00000594862 SNRPGP15A8MWD9 76 aa13.08□□□□□ -0.32
SHKBP1-204ENST00000594862 BUB3O43684 328 aa13.08□□□□□ -0.32
SHKBP1-204ENST00000594862 ATF4P18848 351 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-204ENST00000594862 SNRPD3P62318 126 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-204ENST00000594862 SPANXN5Q5MJ07 72 aa13.08□□□□□ -0.32
SHKBP1-204ENST00000594862 SIGLEC15Q6ZMC9 328 aa13.08□□□□□ -0.32
SHKBP1-204ENST00000594862 STHQ8IWL8 128 aa13.08□□□□□ -0.32
SHKBP1-204ENST00000594862 THAP8Q8NA92 274 aa13.08□□□□□ -0.32
SHKBP1-204ENST00000594862 DCANP1Q8TF63 244 aa13.08□□□□□ -0.32
SHKBP1-204ENST00000594862 PBDC1Q9BVG4 233 aa13.08□□□□□ -0.32
SHKBP1-204ENST00000594862 NRN1Q9NPD7 142 aa13.08□□□□□ -0.32
SHKBP1-204ENST00000594862 C1orf194Q5T5A4 169 aa13.07□□□□□ -0.32
SHKBP1-204ENST00000594862 OR4D5Q8NGN0 318 aa13.07□□□□□ -0.32
SHKBP1-204ENST00000594862 IGKV1D-37A0A075B6S9 117 aa13.06□□□□□ -0.32
SHKBP1-204ENST00000594862 PRSS46E5RG02 174 aa13.06□□□□□ -0.32
SHKBP1-204ENST00000594862 PLA2G10O15496 165 aa13.06□□□□□ -0.32
SHKBP1-204ENST00000594862 SPP1P10451 314 aa13.06□□□□□ -0.32
SHKBP1-204ENST00000594862 AKR1C1Q04828 323 aa13.06□□□□□ -0.32
SHKBP1-204ENST00000594862 ZNF124Q15973 351 aa13.06□□□□□ -0.32
SHKBP1-204ENST00000594862 IAH1Q2TAA2 248 aaPredicted RBP13.06□□□□□ -0.32
SHKBP1-204ENST00000594862 SAMD13Q5VXD3 122 aa13.06□□□□□ -0.32
SHKBP1-204ENST00000594862 LEMD1Q68G75 181 aa13.06□□□□□ -0.32
SHKBP1-204ENST00000594862 MORN3Q6PF18 240 aaPredicted RBP13.06□□□□□ -0.32
SHKBP1-204ENST00000594862 RAB40CQ96S21 281 aa13.06□□□□□ -0.32
SHKBP1-204ENST00000594862 SLC45A2Q9UMX9 530 aa13.06□□□□□ -0.32
SHKBP1-204ENST00000594862 SSSCA1O60232 199 aa13.05□□□□□ -0.32
SHKBP1-204ENST00000594862 TCRBP04435 133 aa13.05□□□□□ -0.32
SHKBP1-204ENST00000594862 ZNF688P0C7X2 276 aa13.05□□□□□ -0.32
SHKBP1-204ENST00000594862 TAS2R30P59541 319 aa13.05□□□□□ -0.32
SHKBP1-204ENST00000594862 LYZP61626 148 aa13.05□□□□□ -0.32
SHKBP1-204ENST00000594862 POLR2GP62487 172 aaKnown RBP eCLIP13.05□□□□□ -0.32
SHKBP1-204ENST00000594862 ZNF90Q03938 601 aa13.05□□□□□ -0.32
SHKBP1-204ENST00000594862 ZNF846Q147U1 533 aa13.05□□□□□ -0.32
SHKBP1-204ENST00000594862 MZT2BQ6NZ67 158 aa13.05□□□□□ -0.32
SHKBP1-204ENST00000594862 FAM24BQ8N5W8 94 aa13.05□□□□□ -0.32
SHKBP1-204ENST00000594862 SMIM8Q96KF7 97 aa13.05□□□□□ -0.32
SHKBP1-204ENST00000594862 PSENENQ9NZ42 101 aa13.05□□□□□ -0.32
SHKBP1-204ENST00000594862 LYSTQ99698 3801 aa13.04□□□□□ -0.32
SHKBP1-204ENST00000594862 H3BP45 60 aa13.04□□□□□ -0.32
SHKBP1-204ENST00000594862 CA1P00915 261 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-204ENST00000594862 TRPT1Q86TN4 253 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-204ENST00000594862 BPIFCQ8NFQ6 507 aa13.04□□□□□ -0.32
SHKBP1-204ENST00000594862 PPP1R14BQ96C90 147 aa13.04□□□□□ -0.32
SHKBP1-204ENST00000594862 NUDT15Q9NV35 164 aa13.04□□□□□ -0.32
SHKBP1-204ENST00000594862 A0A0J9YWU9 116 aa13.03□□□□□ -0.32
SHKBP1-204ENST00000594862 LCE6AA0A183 80 aa13.03□□□□□ -0.32
SHKBP1-204ENST00000594862 FNDC10F2Z333 226 aa13.03□□□□□ -0.32
SHKBP1-204ENST00000594862 TSC22D2O75157 780 aa13.03□□□□□ -0.32
SHKBP1-204ENST00000594862 ACOT7LQ6ZUV0 252 aa13.03□□□□□ -0.32
SHKBP1-204ENST00000594862 TMEM144Q7Z5S9 345 aa13.03□□□□□ -0.32
SHKBP1-204ENST00000594862 ZBTB8BQ8NAP8 495 aaPredicted RBP13.03□□□□□ -0.32
SHKBP1-204ENST00000594862 WDR12Q9GZL7 423 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-204ENST00000594862 RYR2Q92736 4967 aa13.03□□□□□ -0.32
SHKBP1-204ENST00000594862 SACSQ9NZJ4 4579 aa13.03□□□□□ -0.32
SHKBP1-204ENST00000594862 CSMD3Q7Z407 3707 aa13.02□□□□□ -0.32
SHKBP1-204ENST00000594862 IGKV1OR2-108A0A075B7D4 117 aa13.02□□□□□ -0.33
SHKBP1-204ENST00000594862 FAM240BA0A1B0GVZ2 78 aa13.02□□□□□ -0.33
SHKBP1-204ENST00000594862 JTBO76095 146 aa13.02□□□□□ -0.33
SHKBP1-204ENST00000594862 SCGB1D2O95969 90 aa13.02□□□□□ -0.33
SHKBP1-204ENST00000594862 ID1P41134 155 aa13.02□□□□□ -0.33
SHKBP1-204ENST00000594862 OR2F1Q13607 317 aa13.02□□□□□ -0.33
SHKBP1-204ENST00000594862 PSMG4Q5JS54 123 aa13.02□□□□□ -0.33
SHKBP1-204ENST00000594862 S100A7AQ86SG5 101 aa13.02□□□□□ -0.33
SHKBP1-204ENST00000594862 ZNF431Q8TF32 576 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-204ENST00000594862 RARRES2Q99969 163 aa13.02□□□□□ -0.33
SHKBP1-204ENST00000594862 PTTG2Q9NZH5 202 aa13.02□□□□□ -0.33
SHKBP1-204ENST00000594862 TRAV6A0A075B6T7 132 aa13.01□□□□□ -0.33
SHKBP1-204ENST00000594862 MEOX2P50222 304 aa13.01□□□□□ -0.33
SHKBP1-204ENST00000594862 NUTF2P61970 127 aaKnown RBP13.01□□□□□ -0.33
SHKBP1-204ENST00000594862 SELENOTP62341 195 aa13.01□□□□□ -0.33
SHKBP1-204ENST00000594862 DLK1P80370 383 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms