RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TMEM78Q5T7P6 136 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 CYP2G1PQ6ZSU1 146 aa8.02□□□□□ -1.13
LIG3-216ENST00000593099 ZNF253O75346 499 aa8.01□□□□□ -1.13
LIG3-216ENST00000593099 ZNF562Q6V9R5 426 aa8.01□□□□□ -1.13
LIG3-216ENST00000593099 FASNP49327 2511 aaKnown RBP8.01□□□□□ -1.13
LIG3-216ENST00000593099 TMEM262E9PQX1 116 aa8.01□□□□□ -1.13
LIG3-216ENST00000593099 DANCRP0C864 163 aa8.01□□□□□ -1.13
LIG3-216ENST00000593099 PMCHL1Q16048 86 aa8.01□□□□□ -1.13
LIG3-216ENST00000593099 C10orf55Q5SWW7 151 aa8.01□□□□□ -1.13
LIG3-216ENST00000593099 TEX38Q6PEX7 206 aa8.01□□□□□ -1.13
LIG3-216ENST00000593099 TMEM183AQ8IXX5 376 aa8.01□□□□□ -1.13
LIG3-216ENST00000593099 CTSZQ9UBR2 303 aa8.01□□□□□ -1.13
LIG3-216ENST00000593099 EPG5Q9HCE0 2579 aa8.01□□□□□ -1.13
LIG3-216ENST00000593099 LGALSLQ3ZCW2 172 aaPredicted RBP8.01□□□□□ -1.13
LIG3-216ENST00000593099 SLC25A34Q6PIV7 304 aa8.01□□□□□ -1.13
LIG3-216ENST00000593099 RAX2Q96IS3 184 aa8.01□□□□□ -1.13
LIG3-216ENST00000593099 TUBA4BQ9H853 241 aa8.01□□□□□ -1.13
LIG3-216ENST00000593099 IGHV3-49A0A0A0MS15 119 aa8□□□□□ -1.13
LIG3-216ENST00000593099 PAGE4O60829 102 aa8□□□□□ -1.13
LIG3-216ENST00000593099 VENTXO95231 258 aa8□□□□□ -1.13
LIG3-216ENST00000593099 SNRPCP09234 159 aaKnown RBP8□□□□□ -1.13
LIG3-216ENST00000593099 LINC00311Q8N616 119 aa8□□□□□ -1.13
LIG3-216ENST00000593099 C18orf12Q96KH6 178 aa8□□□□□ -1.13
LIG3-216ENST00000593099 SIGLEC9Q9Y336 463 aa8□□□□□ -1.13
LIG3-216ENST00000593099 UFC1Q9Y3C8 167 aa8□□□□□ -1.13
LIG3-216ENST00000593099 ZFYVE26Q68DK2 2539 aa8□□□□□ -1.13
LIG3-216ENST00000593099 PRR14LQ5THK1 2151 aa8□□□□□ -1.13
LIG3-216ENST00000593099 C7orf71A4D174 169 aa8□□□□□ -1.13
LIG3-216ENST00000593099 PNRC1Q12796 327 aaPredicted RBP8□□□□□ -1.13
LIG3-216ENST00000593099 C17orf58Q2M2W7 97 aa8□□□□□ -1.13
LIG3-216ENST00000593099 TMEM70Q9BUB7 260 aa8□□□□□ -1.13
LIG3-216ENST00000593099 RNF114Q9Y508 228 aa8□□□□□ -1.13
LIG3-216ENST00000593099 SPCS1Q9Y6A9 102 aa8□□□□□ -1.13
LIG3-216ENST00000593099 SONP18583 2426 aaKnown RBP8□□□□□ -1.13
LIG3-216ENST00000593099 LHBP01229 141 aa8□□□□□ -1.13
LIG3-216ENST00000593099 C9orf62Q8N4C0 152 aa8□□□□□ -1.13
LIG3-216ENST00000593099 VAX2Q9UIW0 290 aa8□□□□□ -1.13
LIG3-216ENST00000593099 RBFOX3A6NFN3 312 aa8□□□□□ -1.13
LIG3-216ENST00000593099 MPTX1A8MV57 137 aa8□□□□□ -1.13
LIG3-216ENST00000593099 TMEM241Q24JQ0 296 aa8□□□□□ -1.13
LIG3-216ENST00000593099 MRPL32Q9BYC8 188 aaKnown RBP8□□□□□ -1.13
LIG3-216ENST00000593099 FUT9Q9Y231 359 aa8□□□□□ -1.13
LIG3-216ENST00000593099 DNAH12Q6ZR08 3092 aa8□□□□□ -1.13
LIG3-216ENST00000593099 PSG9Q00887 426 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 IL17RELQ6ZVW7 336 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 PUSL1Q8N0Z8 303 aaKnown RBP7.99□□□□□ -1.13
LIG3-216ENST00000593099 LRRC75A-AS1Q8N1F1 130 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 HSPB9Q9BQS6 159 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 SHANK1Q9Y566 2161 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 YLPM1P49750 1951 aaKnown RBP7.99□□□□□ -1.13
LIG3-216ENST00000593099 OR2T8A6NH00 312 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 LINC00473A8K010 186 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 SPRNQ5BIV9 151 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 LRTM2Q8N967 370 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 OR1P1Q8NH06 330 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 SS18L2Q9UHA2 77 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 MED12LQ86YW9 2145 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 ORM1P02763 201 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 SRSF9Q13242 221 aaKnown RBP eCLIP7.99□□□□□ -1.13
LIG3-216ENST00000593099 OXLD1Q5BKU9 147 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 Q6ZSR3 168 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 Q8NFD4 153 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 IGSF23A1L1A6 192 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 PMVKQ15126 192 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 TMEM136Q6ZRR5 245 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 TMEM144Q7Z5S9 345 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 DDB2Q92466 427 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 MAP1LC3CQ9BXW4 147 aa7.99□□□□□ -1.13
LIG3-216ENST00000593099 TNRC6AQ8NDV7 1962 aaKnown RBP7.98□□□□□ -1.13
LIG3-216ENST00000593099 EML5Q05BV3 1969 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 FAM181BA6NEQ2 426 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 TSPOP30536 169 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 DLX1P56177 255 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 IFITM2Q01629 132 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 OR10AG1Q8NH19 301 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 MRAP2Q96G30 205 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 ZNRD1Q9P1U0 126 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 ZFP30Q9Y2G7 519 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 ATG2AQ2TAZ0 1938 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 TMEM238LA0A1B0GVL6 79 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 PGPA6NDG6 321 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 A6NJY4 79 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 MSMPQ1L6U9 139 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 PVRIGQ6DKI7 326 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 ZNF329Q86UD4 541 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 NOTCH3Q9UM47 2321 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 IGHV3OR16-8A0A075B7F1 116 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 IGKV1-6A0A0C4DH72 117 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 TMEM189A5PLL7 270 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 F5H697 171 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 IGFBP2P18065 325 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 ID3Q02535 119 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 CD69Q07108 199 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.98□□□□□ -1.13
LIG3-216ENST00000593099 IL6RP08887 468 aaPredicted RBP7.97□□□□□ -1.13
LIG3-216ENST00000593099 BTCP35070 178 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 IER3P46695 156 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 C15orf32Q32M92 178 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 TMEM95Q3KNT9 176 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 USMG5Q96IX5 58 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms