RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 RPS4XP62701 263 aaKnown RBP4.68□□□□□ -1.66
SMAD4-208ENST00000589706 QRFPP83859 136 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 FUT7Q11130 342 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 TMEM187Q14656 261 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 TMEM52BQ4KMG9 183 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 TMEM78Q5T7P6 136 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 LINC01590Q5TEZ4 76 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 ZFAND6Q6FIF0 208 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 OR4C11Q6IEV9 310 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 SLC25A47Q6Q0C1 308 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 Q6Q795 121 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 SIGLEC15Q6ZMC9 328 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 ADAMTSL5Q6ZMM2 481 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 ZNF547Q8IVP9 402 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 SLC22A24Q8N4F4 322 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 GVQW1Q8N7I0 195 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.68□□□□□ -1.66
SMAD4-208ENST00000589706 OR4X2Q8NGF9 303 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 OR5D14Q8NGL3 314 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 OR5C1Q8NGR4 320 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 OR10AC1Q8NH08 325 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 OR52N5Q8NH56 324 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 OR1L1Q8NH94 360 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 TSKUQ8WUA8 353 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 TMEM54Q969K7 222 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 DNAJC30Q96LL9 226 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 VGLL1Q99990 258 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 TMEM204Q9BSN7 226 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 FAM103A1Q9BTL3 118 aaKnown RBP4.68□□□□□ -1.66
SMAD4-208ENST00000589706 NXF5Q9H1B4 397 aaKnown RBP4.68□□□□□ -1.66
SMAD4-208ENST00000589706 GNB4Q9HAV0 340 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 RPRMQ9NS64 109 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 ANXA10Q9UJ72 324 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 SIGLEC9Q9Y336 463 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 PIKFYVEQ9Y2I7 2098 aa4.68□□□□□ -1.66
SMAD4-208ENST00000589706 CACNA1CQ13936 2221 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 KBTBD11-OT1A0A1B0GTJ5 212 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 CTXND1A0A1B0GTU2 59 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 TMEM14DPA8MWL7 114 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 TMEM262E9PQX1 116 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 C15orf65H3BRN8 121 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 H3BUT2 72 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 CCL24O00175 119 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 SAP18O00422 153 aaKnown RBP4.67□□□□□ -1.66
SMAD4-208ENST00000589706 HMGB3O15347 200 aaKnown RBP4.67□□□□□ -1.66
SMAD4-208ENST00000589706 GYPBP06028 91 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 RHOCP08134 193 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 COX8AP10176 69 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 HIST1H1CP16403 213 aaKnown RBP4.67□□□□□ -1.66
SMAD4-208ENST00000589706 ALOX5APP20292 161 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 HIST1H1TP22492 207 aaPredicted RBP4.67□□□□□ -1.66
SMAD4-208ENST00000589706 PEBP1P30086 187 aaKnown RBP4.67□□□□□ -1.66
SMAD4-208ENST00000589706 DUTP33316 252 aaKnown RBP4.67□□□□□ -1.66
SMAD4-208ENST00000589706 PTGDSP41222 190 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 GPR1P46091 355 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 FABP6P51161 128 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 DYNLT3P51808 116 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 ZNF133P52736 654 aaPredicted RBP4.67□□□□□ -1.66
SMAD4-208ENST00000589706 TGFBR3Q03167 851 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 ZNF90Q03938 601 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 KLF5Q13887 457 aaPredicted RBP4.67□□□□□ -1.66
SMAD4-208ENST00000589706 OR1Q1Q15612 314 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 ALKBH6Q3KRA9 238 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 WDR38Q5JTN6 314 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.67□□□□□ -1.66
SMAD4-208ENST00000589706 C1orf140Q5VVS0 124 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 CBLN3Q6UW01 205 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 GLIPR1L1Q6UWM5 242 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 C9orf47Q6ZRZ4 202 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 Q6ZS49 121 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 SHISA6Q6ZSJ9 500 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 C1QL2Q7Z5L3 287 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 CA13Q8N1Q1 262 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 TEX29Q8N6K0 151 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 BCORP1Q8N888 145 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 DCAF4L2Q8NA75 395 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 ZNF439Q8NDP4 499 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 WFDC11Q8NEX6 87 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 OR1L3Q8NH93 324 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 SLC37A2Q8TED4 501 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 ZNF721Q8TF20 911 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 LHX4Q969G2 390 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 SLC25A44Q96H78 314 aaPredicted RBP4.67□□□□□ -1.66
SMAD4-208ENST00000589706 ADTRPQ96IZ2 230 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 OXGR1Q96P68 337 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 SPAG8Q99932 426 aaPredicted RBP4.67□□□□□ -1.66
SMAD4-208ENST00000589706 TTTY10Q9BZA0 68 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 ATG10Q9H0Y0 220 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 LIME1Q9H400 295 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 ELOVL3Q9HB03 270 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 ZNF286AQ9HBT8 521 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 HES4Q9HCC6 221 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 SLC39A9Q9NUM3 307 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 CLCF1Q9UBD9 225 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 CES1P1Q9UKY3 287 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 FOXA2Q9Y261 457 aaPredicted RBP4.67□□□□□ -1.66
SMAD4-208ENST00000589706 LINC00312Q9Y6C7 94 aa4.67□□□□□ -1.66
SMAD4-208ENST00000589706 NCOA6Q14686 2063 aaPredicted RBP4.67□□□□□ -1.66
SMAD4-208ENST00000589706 KIR2DS1A0A191URI9 304 aa4.66□□□□□ -1.66
SMAD4-208ENST00000589706 FAM24AA6NFZ4 105 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms