RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 MFFQ9GZY8 342 aa16.41■□□□□ 0.22
CLN3-232ENST00000568443 ZFP92A6NM28 416 aa16.4■□□□□ 0.22
CLN3-232ENST00000568443 BUB3O43684 328 aa16.4■□□□□ 0.22
CLN3-232ENST00000568443 SPP1P10451 314 aa16.4■□□□□ 0.22
CLN3-232ENST00000568443 PSMG4Q5JS54 123 aa16.4■□□□□ 0.22
CLN3-232ENST00000568443 LRTM2Q8N967 370 aa16.4■□□□□ 0.22
CLN3-232ENST00000568443 SLC35E1Q96K37 410 aa16.4■□□□□ 0.22
CLN3-232ENST00000568443 DEFB4AO15263 64 aa16.39■□□□□ 0.21
CLN3-232ENST00000568443 PITX3O75364 302 aa16.39■□□□□ 0.21
CLN3-232ENST00000568443 NANOS2P60321 138 aaKnown RBP16.39■□□□□ 0.21
CLN3-232ENST00000568443 SNRPD3P62318 126 aaKnown RBP16.39■□□□□ 0.21
CLN3-232ENST00000568443 RAB11AP62491 216 aa16.39■□□□□ 0.21
CLN3-232ENST00000568443 GAMTQ14353 236 aa16.39■□□□□ 0.21
CLN3-232ENST00000568443 SIGLEC15Q6ZMC9 328 aa16.39■□□□□ 0.21
CLN3-232ENST00000568443 CCDC190Q86UF4 302 aa16.39■□□□□ 0.21
CLN3-232ENST00000568443 RNF125Q96EQ8 232 aa16.39■□□□□ 0.21
CLN3-232ENST00000568443 RAB40CQ96S21 281 aa16.39■□□□□ 0.21
CLN3-232ENST00000568443 PBDC1Q9BVG4 233 aa16.39■□□□□ 0.21
CLN3-232ENST00000568443 PFDN2Q9UHV9 154 aa16.39■□□□□ 0.21
CLN3-232ENST00000568443 GIG44P09565 113 aaPredicted RBP16.38■□□□□ 0.21
CLN3-232ENST00000568443 SLC25A6P12236 298 aa16.38■□□□□ 0.21
CLN3-232ENST00000568443 NRN1Q9NPD7 142 aa16.38■□□□□ 0.21
CLN3-232ENST00000568443 FBXL17Q9UF56 701 aa16.38■□□□□ 0.21
CLN3-232ENST00000568443 TMED3Q9Y3Q3 217 aa16.38■□□□□ 0.21
CLN3-232ENST00000568443 FAM90A26D6RGX4 464 aa16.37■□□□□ 0.21
CLN3-232ENST00000568443 MED6O75586 246 aa16.37■□□□□ 0.21
CLN3-232ENST00000568443 SFT2D2O95562 160 aa16.37■□□□□ 0.21
CLN3-232ENST00000568443 FABP1P07148 127 aa16.37■□□□□ 0.21
CLN3-232ENST00000568443 IAPPP10997 89 aa16.37■□□□□ 0.21
CLN3-232ENST00000568443 NUP62P37198 522 aaPredicted RBP16.37■□□□□ 0.21
CLN3-232ENST00000568443 SPANXN2Q5MJ10 180 aa16.37■□□□□ 0.21
CLN3-232ENST00000568443 PAIP2BQ9ULR5 123 aaKnown RBP16.37■□□□□ 0.21
CLN3-232ENST00000568443 BIRC6Q9NR09 4857 aa16.37■□□□□ 0.21
CLN3-232ENST00000568443 ZNF90Q03938 601 aa16.36■□□□□ 0.21
CLN3-232ENST00000568443 PPP1R1AQ13522 171 aa16.36■□□□□ 0.21
CLN3-232ENST00000568443 CENPSQ8N2Z9 138 aa16.36■□□□□ 0.21
CLN3-232ENST00000568443 SEPSECSQ9HD40 501 aaKnown RBP16.36■□□□□ 0.21
CLN3-232ENST00000568443 OR8G2PQ6IF36 304 aa16.35■□□□□ 0.21
CLN3-232ENST00000568443 CIB3Q96Q77 187 aaPredicted RBP16.35■□□□□ 0.21
CLN3-232ENST00000568443 RBM38Q9H0Z9 239 aaKnown RBP16.35■□□□□ 0.21
CLN3-232ENST00000568443 IGKV1D-37A0A075B6S9 117 aa16.34■□□□□ 0.21
CLN3-232ENST00000568443 SNRPGP15A8MWD9 76 aa16.34■□□□□ 0.21
CLN3-232ENST00000568443 ZNF701M0R085 212 aaPredicted RBP16.34■□□□□ 0.21
CLN3-232ENST00000568443 HOXB5P09067 269 aa16.34■□□□□ 0.21
CLN3-232ENST00000568443 C4BPBP20851 252 aa16.34■□□□□ 0.21
CLN3-232ENST00000568443 INPP1P49441 399 aa16.34■□□□□ 0.21
CLN3-232ENST00000568443 RPP30P78346 268 aaKnown RBP16.34■□□□□ 0.21
CLN3-232ENST00000568443 Q8NAQ8 132 aa16.34■□□□□ 0.21
CLN3-232ENST00000568443 MAGT1Q9H0U3 335 aa16.34■□□□□ 0.21
CLN3-232ENST00000568443 SYNGR2O43760 224 aa16.33■□□□□ 0.2
CLN3-232ENST00000568443 MIFP14174 115 aa16.33■□□□□ 0.2
CLN3-232ENST00000568443 LYZP61626 148 aa16.33■□□□□ 0.2
CLN3-232ENST00000568443 NUTF2P61970 127 aaKnown RBP16.33■□□□□ 0.2
CLN3-232ENST00000568443 CLEC5AQ9NY25 188 aa16.33■□□□□ 0.2
CLN3-232ENST00000568443 IGHV4-28A0A0C4DH34 117 aa16.32■□□□□ 0.2
CLN3-232ENST00000568443 WRBO00258 174 aa16.32■□□□□ 0.2
CLN3-232ENST00000568443 OR2F1Q13607 317 aa16.32■□□□□ 0.2
CLN3-232ENST00000568443 PPP1R14BQ96C90 147 aa16.32■□□□□ 0.2
CLN3-232ENST00000568443 TRGV9Q99603 122 aa16.32■□□□□ 0.2
CLN3-232ENST00000568443 SRRQ9GZT4 340 aa16.32■□□□□ 0.2
CLN3-232ENST00000568443 TBC1D24Q9ULP9 559 aa16.32■□□□□ 0.2
CLN3-232ENST00000568443 ZNF705EA8MWA4 302 aaPredicted RBP16.31■□□□□ 0.2
CLN3-232ENST00000568443 RBMY1A1P0DJD3 496 aaKnown RBP16.31■□□□□ 0.2
CLN3-232ENST00000568443 RBMY1CP0DJD4 496 aa16.31■□□□□ 0.2
CLN3-232ENST00000568443 UBE2MP61081 183 aaKnown RBP16.31■□□□□ 0.2
CLN3-232ENST00000568443 RBMY1FQ15415 496 aaKnown RBP16.31■□□□□ 0.2
CLN3-232ENST00000568443 C1orf194Q5T5A4 169 aa16.31■□□□□ 0.2
CLN3-232ENST00000568443 GGNBP1Q5YKI7 109 aa16.31■□□□□ 0.2
CLN3-232ENST00000568443 CSNK1G2-AS1Q8NCQ2 148 aa16.31■□□□□ 0.2
CLN3-232ENST00000568443 C1QTNF4Q9BXJ3 329 aa16.31■□□□□ 0.2
CLN3-232ENST00000568443 NAP1L6A6NFF2 107 aa16.3■□□□□ 0.2
CLN3-232ENST00000568443 H3BMM0 161 aa16.3■□□□□ 0.2
CLN3-232ENST00000568443 ID1P41134 155 aa16.3■□□□□ 0.2
CLN3-232ENST00000568443 NKX2-1P43699 371 aaPredicted RBP16.3■□□□□ 0.2
CLN3-232ENST00000568443 TRIQKQ629K1 86 aa16.3■□□□□ 0.2
CLN3-232ENST00000568443 C2CD4CQ8TF44 421 aa16.3■□□□□ 0.2
CLN3-232ENST00000568443 HRH4Q9H3N8 390 aa16.3■□□□□ 0.2
CLN3-232ENST00000568443 X6R8D5 127 aa16.3■□□□□ 0.2
CLN3-232ENST00000568443 C9orf170A2RU37 121 aa16.29■□□□□ 0.2
CLN3-232ENST00000568443 BAK1Q16611 211 aa16.29■□□□□ 0.2
CLN3-232ENST00000568443 SPANXN5Q5MJ07 72 aa16.29■□□□□ 0.2
CLN3-232ENST00000568443 LGALS9CQ6DKI2 356 aa16.29■□□□□ 0.2
CLN3-232ENST00000568443 THAP8Q8NA92 274 aa16.29■□□□□ 0.2
CLN3-232ENST00000568443 LINC00052Q96N35 136 aa16.29■□□□□ 0.2
CLN3-232ENST00000568443 IGKV1OR2-108A0A075B7D4 117 aa16.28■□□□□ 0.2
CLN3-232ENST00000568443 NDUFB6O95139 128 aa16.28■□□□□ 0.2
CLN3-232ENST00000568443 CFDP00746 253 aaPredicted RBP16.28■□□□□ 0.2
CLN3-232ENST00000568443 OR8I2Q8N0Y5 310 aa16.28■□□□□ 0.2
CLN3-232ENST00000568443 WDR12Q9GZL7 423 aaKnown RBP16.28■□□□□ 0.2
CLN3-232ENST00000568443 XCL2Q9UBD3 114 aa16.28■□□□□ 0.2
CLN3-232ENST00000568443 LINC00854A0A1B0GVQ3 168 aa16.27■□□□□ 0.2
CLN3-232ENST00000568443 C11orf94C9JXX5 98 aa16.27■□□□□ 0.2
CLN3-232ENST00000568443 HLA-DRB4P13762 266 aa16.27■□□□□ 0.2
CLN3-232ENST00000568443 STRAPQ9Y3F4 350 aaKnown RBP16.27■□□□□ 0.2
CLN3-232ENST00000568443 HLA-DRB4X5D2U9 266 aa16.27■□□□□ 0.2
CLN3-232ENST00000568443 PRSS46E5RG02 174 aa16.26■□□□□ 0.19
CLN3-232ENST00000568443 ADAP1O75689 374 aa16.26■□□□□ 0.19
CLN3-232ENST00000568443 HLA-DMBP28068 263 aa16.26■□□□□ 0.19
CLN3-232ENST00000568443 TCTAP57738 103 aa16.26■□□□□ 0.19
CLN3-232ENST00000568443 COQ8AQ8NI60 647 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms